Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018528.1

Orthogroup ID

OG0018684

Physical Location & Seq

Genomic Coordinates Forward (+)

3759 .. 7445

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018528.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggaggagaccgaggcctttagggttgtttattattattattttttaatatttaaccagtgttctaaaacgcggccgcccagccccactaggcggggcctctccgcctcgaggaatggcaaatcggagcttctaggcgttcgtgatttaggcggatgggctgctgggcggctcgctgggcgcagatcggatcgaaagcttcttcgtcgctctgggtctttctctctgaggctctgcacgcggctgaactctggaacgaggtcggaaccagatcgaaactctgaagcagatcagattggaagcttcttcgtcgctctaggtctttctctcattcgttcatccctcccattcgttcttctcttcacttcttcctcttcttcttcttcttttccgagtctctcagccgtaaacggaagtcacactcctccgcgcctccaccaccgtcgtaaaccctccgattcaggccaacacactcggttatggctcctcacggcgacaaatcggacgctgcggaggacgccatggtttccggagaagcgccccatttcctccgtcctcatcgtcatcgctatgcagactgaggcgcttccggtggtgaataagtttaacctcactgaggtccctgactccgggtttccgaaaggagttccttgggttcggtatcatggtttttacaaagatcttgagattaatctagtgtggcctggaaaagatgaatctttgggctttaccttttctctctctattcagataatactgttggattcaagcaggaatcagttaaataggagggcccttcagaattgttatacctattgccaaattccaaaatgctttatacgggatgttggcatgaggtttggaattatgtttgagacagaggactccgacatgtgcaaagctcagttaaactttggggaacctgatagtgccattcagagctttgacaaagcattagccatcaagattcaatcacaggatgttgggtacaaagttgcttcatatatagattgtgcaggaggggaaaagatacagttcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

347

Amino Acids

39.14

Weight (kDa)

9.68

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018684)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha	Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana	Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	109
AccII	CGCG	3 cut(s)	73, 241, 430
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	9 cut(s)	73, 77, 94, 105, 153, 169, 241, 428, 511
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	822
AcuI	CTGAAG	2 cut(s)	303, 782
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	1 cut(s)	989
AfiI	CCNNNNNNNGG	4 cut(s)	93, 111, 616, 629
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	2 cut(s)	768, 971
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	5 cut(s)	130, 199, 303, 902, 942
AluI	AGCT	5 cut(s)	130, 199, 303, 902, 942
Alw26I	GTCTC	3 cut(s)	2, 401, 869
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	6 cut(s)	15, 74, 97, 463, 701, 792
ApaI	GGGCCC	1 cut(s)	796
ApeKI	GCWGC	2 cut(s)	161, 508
ApoI	RAATTY	1 cut(s)	822
AseI	ATTAAT	1 cut(s)	690
AspLEI	GCGC	4 cut(s)	183, 432, 540, 586
AspS9I	GGNCC	4 cut(s)	97, 619, 792, 793
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	796
BbvI	GCAGC	2 cut(s)	148, 495
BccI	CCATC	2 cut(s)	150, 968
BceAI	ACGGC	2 cut(s)	389, 507
BciT130I	CCWGG	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	2, 401, 869
BfaI	CTAG	4 cut(s)	90, 134, 317, 695
BfoI	RGCGCY	2 cut(s)	541, 587
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	6 cut(s)	74, 77, 162, 170, 242, 509
BlsI	GCNGC	6 cut(s)	75, 78, 163, 171, 243, 510
Bme1390I	CCNGG	2 cut(s)	631, 705
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	4 cut(s)	97, 619, 792, 793
BmiI	GGNNCC	6 cut(s)	98, 267, 485, 621, 794, 921
BmrFI	CCNGG	2 cut(s)	631, 705
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	3 cut(s)	12, 521, 650
BsaWI	WCCGGW	2 cut(s)	529, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 111, 616, 629
Bse1I	ACTGG	1 cut(s)	58
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	3 cut(s)	12, 521, 650
BseGI	GGATG	4 cut(s)	161, 338, 850, 985
BseLI	CCNNNNNNNGG	4 cut(s)	93, 111, 616, 629
BseMII	CTCAG	5 cut(s)	218, 414, 570, 606, 917
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	3 cut(s)	20, 414, 476
BseSI	GKGCMC	1 cut(s)	796
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	148, 495
BseYI	CCCAGC	3 cut(s)	80, 164, 176
BsgI	GTGCAG	2 cut(s)	220, 1035
Bsh1236I	CGCG	3 cut(s)	73, 241, 430
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	6 cut(s)	17, 76, 99, 465, 703, 794
BsiEI	CGRYCG	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	530, 590, 630
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	4 cut(s)	93, 111, 616, 629
BsmAI	GTCTC	3 cut(s)	2, 401, 869
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	6 cut(s)	17, 76, 99, 465, 703, 794
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	109
Bsp120I	GGGCCC	1 cut(s)	792
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	5 cut(s)	185, 190, 271, 289, 679
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	9 cut(s)	73, 77, 94, 105, 153, 169, 241, 428, 511
BspANI	GGCC	6 cut(s)	17, 76, 99, 465, 703, 794
BspCNI	CTCAG	5 cut(s)	219, 413, 571, 607, 916
BspEI	TCCGGA	1 cut(s)	529
BspFNI	CGCG	3 cut(s)	73, 241, 430
BspLI	GGNNCC	6 cut(s)	98, 267, 485, 621, 794, 921
BspPI	GGATC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	2
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	12, 521, 650
BssMI	GATC	5 cut(s)	185, 190, 271, 289, 679
BssNI	GRCGYC	1 cut(s)	518
BssT1I	CCWWGG	2 cut(s)	521, 650
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	3 cut(s)	443, 759, 1035
Bst6I	CTCTTC	2 cut(s)	365, 379
BstACI	GRCGYC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	174, 239
BstDEI	CTNAG	5 cut(s)	227, 400, 579, 615, 903
BstDSI	CCRYGG	1 cut(s)	521
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	4 cut(s)	161, 338, 850, 985
BstFNI	CGCG	3 cut(s)	73, 241, 430
BstH2I	RGCGCY	2 cut(s)	541, 587
BstHHI	GCGC	4 cut(s)	183, 432, 540, 586
BstKTI	GATC	5 cut(s)	188, 193, 274, 292, 682
BstMAI	GTCTC	3 cut(s)	2, 401, 869
BstMBI	GATC	5 cut(s)	185, 190, 271, 289, 679
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 238, 517
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	2 cut(s)	629, 703
BstSLI	GKGCMC	1 cut(s)	796
BstUI	CGCG	3 cut(s)	73, 241, 430
BstV1I	GCAGC	2 cut(s)	148, 495
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	6 cut(s)	17, 76, 99, 465, 703, 794
BtgI	CCRYGG	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	550
BtsCI	GGATG	4 cut(s)	161, 338, 850, 985
BtsIMutI	CAGTG	2 cut(s)	65, 612
Cac8I	GCNNGC	2 cut(s)	174, 239
CciNI	GCGGCCGC	1 cut(s)	74
CfoI	GCGC	4 cut(s)	183, 432, 540, 586
Cfr13I	GGNCC	4 cut(s)	97, 619, 792, 793
CseI	GACGC	2 cut(s)	514, 526
Csp6I	GTAC	1 cut(s)	988
CviAII	CATG	5 cut(s)	522, 665, 853, 892, 1039
CviQI	GTAC	1 cut(s)	988
DdeI	CTNAG	5 cut(s)	227, 400, 579, 615, 903
DpnI	GATC	5 cut(s)	187, 192, 273, 291, 681
DpnII	GATC	5 cut(s)	185, 190, 271, 289, 679
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	365, 379
EarI	CTCTTC	2 cut(s)	365, 379
EciI	GGCGGA	2 cut(s)	94, 168
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	521, 650
Eco147I	AGGCCT	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	796
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	619
Eco52I	CGGCCG	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	303, 782
Eco88I	CYCGRG	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	4 cut(s)	97, 619, 792, 793
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	521, 650
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	521, 650
FaeI	CATG	5 cut(s)	525, 668, 856, 895, 1042
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	5 cut(s)	521, 664, 852, 891, 1038
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	6 cut(s)	74, 77, 162, 170, 242, 509
FokI	GGATG	4 cut(s)	168, 325, 857, 992
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	6 cut(s)	74, 77, 162, 170, 242, 509
FspBI	CTAG	4 cut(s)	90, 134, 317, 695
GlaI	GCGC	4 cut(s)	182, 431, 539, 585
GluI	GCNGC	6 cut(s)	74, 77, 162, 170, 242, 509
GsaI	CCCAGC	3 cut(s)	84, 168, 180
HaeII	RGCGCY	2 cut(s)	541, 587
HaeIII	GGCC	6 cut(s)	17, 76, 99, 465, 703, 794
HapII	CCGG	3 cut(s)	530, 590, 630
HgaI	GACGC	2 cut(s)	514, 526
HhaI	GCGC	4 cut(s)	183, 432, 540, 586
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	5 cut(s)	525, 668, 856, 895, 1042
Hin6I	GCGC	4 cut(s)	181, 430, 538, 584
HinP1I	GCGC	4 cut(s)	181, 430, 538, 584
HindIII	AAGCTT	2 cut(s)	197, 301
HinfI	GANTC	8 cut(s)	394, 458, 626, 716, 764, 775, 884, 967
HpaII	CCGG	3 cut(s)	530, 590, 630
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	2 cut(s)	409, 449
Hpy188III	TCNNGA	5 cut(s)	143, 252, 530, 683, 964
Hpy8I	GTNNAC	2 cut(s)	409, 449
Hpy99I	CGWCG	3 cut(s)	210, 314, 447
HpyAV	CCTTC	1 cut(s)	806
HpyCH4III	ACNGT	3 cut(s)	443, 759, 1035
HpyCH4V	TGCA	4 cut(s)	237, 574, 897, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 238, 517
HpyF3I	CTNAG	5 cut(s)	227, 400, 579, 615, 903
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	5 cut(s)	525, 668, 856, 895, 1042
HspAI	GCGC	4 cut(s)	181, 430, 538, 584
Kpn2I	TCCGGA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	185, 190, 271, 289, 679
LmnI	GCTCC	2 cut(s)	127, 489
Lsp1109I	GCAGC	2 cut(s)	148, 495
MaeI	CTAG	4 cut(s)	90, 134, 317, 695
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	5 cut(s)	187, 192, 273, 291, 681
MboI	GATC	5 cut(s)	185, 190, 271, 289, 679
MboII	GAAGA	9 cut(s)	194, 298, 347, 352, 360, 366, 369, 372, 375
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	3 cut(s)	802, 822, 864
MlyI	GAGTC	3 cut(s)	403, 620, 878
MmeI	TCCRAC	3 cut(s)	243, 741, 912
MroI	TCCGGA	1 cut(s)	529
MseI	TTAA	6 cut(s)	47, 54, 606, 690, 782, 908
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	3 cut(s)	530, 590, 630
MspR9I	CCNGG	2 cut(s)	631, 705
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	3 cut(s)	73, 241, 430
MwoI	GCNNNNNNNGC	3 cut(s)	178, 238, 517
NciI	CCSGG	1 cut(s)	631
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	5 cut(s)	185, 190, 271, 289, 679
NlaIII	CATG	5 cut(s)	525, 668, 856, 895, 1042
NlaIV	GGNNCC	6 cut(s)	98, 267, 485, 621, 794, 921
NmuCI	GTSAC	1 cut(s)	416
NotI	GCGGCCGC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	895
PaeR7I	CTCGAG	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	17
PciI	ACATGT	1 cut(s)	891
PfeI	GAWTC	5 cut(s)	458, 716, 764, 775, 967
PkrI	GCNGC	6 cut(s)	75, 78, 163, 171, 243, 510
PleI	GAGTC	3 cut(s)	402, 620, 878
PpsI	GAGTC	3 cut(s)	402, 620, 878
PpuMI	RGGWCCY	1 cut(s)	619
PscI	ACATGT	1 cut(s)	891
PshBI	ATTAAT	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	3 cut(s)	80, 164, 176
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	6 cut(s)	98, 267, 485, 621, 794, 921
PspOMI	GGGCCC	1 cut(s)	792
PspPI	GGNCC	4 cut(s)	97, 619, 792, 793
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	1 cut(s)	989
RsaNI	GTAC	1 cut(s)	988
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	6 cut(s)	47, 54, 606, 690, 782, 908
SatI	GCNGC	6 cut(s)	74, 77, 162, 170, 242, 509
Sau3AI	GATC	5 cut(s)	185, 190, 271, 289, 679
Sau96I	GGNCC	4 cut(s)	97, 619, 792, 793
SchI	GAGTC	3 cut(s)	403, 620, 878
ScrFI	CCNGG	2 cut(s)	631, 705
SduI	GDGCHC	1 cut(s)	796
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	109, 683
SmoI	CTYRAG	2 cut(s)	109, 683
Sse9I	AATT	3 cut(s)	802, 822, 864
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	9 cut(s)	73, 77, 94, 105, 153, 169, 241, 428, 511
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	4 cut(s)	90, 134, 317, 695
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	629, 703
StyI	CCWWGG	2 cut(s)	521, 650
TaaI	ACNGT	3 cut(s)	443, 759, 1035
TaqI	TCGA	3 cut(s)	110, 193, 274
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	802, 822, 864
TauI	GCSGC	4 cut(s)	76, 79, 172, 244
TfiI	GAWTC	5 cut(s)	458, 716, 764, 775, 967
Tru1I	TTAA	6 cut(s)	47, 54, 606, 690, 782, 908
Tru9I	TTAA	6 cut(s)	47, 54, 606, 690, 782, 908
TscAI	CASTG	2 cut(s)	65, 619
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	161, 508
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	327, 729, 990, 1027
TspGWI	ACGGA	2 cut(s)	426, 541
TspRI	CASTG	2 cut(s)	65, 619
VpaK11BI	GGWCC	1 cut(s)	619
VspI	ATTAAT	1 cut(s)	690
XagI	CCTNNNNNAGG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	822
XceI	RCATGY	1 cut(s)	895
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	4 cut(s)	90, 134, 317, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.