Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018684

Physical Location & Seq

Genomic Coordinates Forward (+)

83943214 .. 83944047

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG533100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTCCTCACGGCGACAAATCGGACGCTGCGGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCCCCATTTCCTCCGTCCTCATCGTCATCGCTATGCAGACTGAGGCGCTTCCGGTGGTGAATAAGTTTAACCTCACTGAGGTCCCTGACTCCGGGTTTCCGAAAGGAGTTCCTTGGGTTCGGTATCATGGTTTTTACAAAGATCTTGAGATTAATCTAGTGTGGCCTGGAAAAGATGAATCTTTGGTAACTTGGAGAAGAACAAGCTCAAATGGTTCACTTCCGAGTATGCTTATTGGTAAAATCGACAAAGGTACTTATCTTCCATTCTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

6.07

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018684)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha	Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana	Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	142, 155
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	56, 270
AluI	AGCT	2 cut(s)	56, 270
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	66, 112
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	67, 113
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	157, 231
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	6, 147
BmrFI	CCNGG	2 cut(s)	157, 231
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 176
BsaWI	WCCGGW	2 cut(s)	50, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 155
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	42, 176
BseLI	CCNNNNNNNGG	2 cut(s)	142, 155
BseMII	CTCAG	3 cut(s)	48, 96, 132
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	51, 116, 156
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	142, 155
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	3 cut(s)	49, 97, 133
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	6, 147
BssECI	CCNNGG	2 cut(s)	42, 176
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	42, 176
Bst2UI	CCWGG	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	57, 105, 141
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	67, 113
BstHHI	GCGC	2 cut(s)	66, 112
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	155, 229
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	138
CfoI	GCGC	2 cut(s)	66, 112
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	2 cut(s)	35, 47
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	43, 191
CviJI	RGCY	4 cut(s)	5, 56, 229, 270
CviKI_1	RGCY	4 cut(s)	5, 56, 229, 270
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	57, 105, 141
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	42, 176
Eco47I	GGWCC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	42, 176
ErhI	CCWWGG	2 cut(s)	42, 176
FaeI	CATG	2 cut(s)	46, 194
FaiI	YATR	4 cut(s)	44, 98, 192, 293
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	42, 190
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	65, 111
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	2 cut(s)	67, 113
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	3 cut(s)	51, 116, 156
HgaI	GACGC	2 cut(s)	35, 47
HhaI	GCGC	2 cut(s)	66, 112
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	46, 194
Hin6I	GCGC	2 cut(s)	64, 110
HinP1I	GCGC	2 cut(s)	64, 110
HinfI	GANTC	2 cut(s)	152, 242
HpaII	CCGG	3 cut(s)	51, 116, 156
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	25, 165, 288
Hpy188III	TCNNGA	2 cut(s)	51, 209
Hpy8I	GTNNAC	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	57, 105, 141
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	46, 194
HspAI	GCGC	2 cut(s)	64, 110
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	10, 53
LpnPI	CCDG	6 cut(s)	64, 129, 162, 169, 216, 243
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	273, 317
MflI	RGATCY	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	18, 28, 85, 92, 100, 136, 146
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	2 cut(s)	132, 216
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	3 cut(s)	51, 116, 156
MspR9I	CCNGG	2 cut(s)	157, 231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	46, 194
NlaIV	GGNNCC	2 cut(s)	6, 147
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	6, 147
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	132, 216
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	157, 231
SetI	ASST	5 cut(s)	58, 138, 147, 272, 319
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	155, 229
StyI	CCWWGG	2 cut(s)	42, 176
TaqI	TCGA	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	132, 216
Tru9I	TTAA	2 cut(s)	132, 216
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.