Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018684

Physical Location & Seq

Genomic Coordinates Reverse (-)

62601766 .. 62606020

Gene Structure 4255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG449500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCTCCTCACGGCGACAAATCGGACGCCGCGGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCCCCATTTCCTCCGTCCTCATCGTCATCGTAATTTTTCGAAGTAAAAACACAGCTATGCAGACTGAGGCGCTTCCGGTGGTGAATAAGTTTAACCTGACTGAGGTCCCTGACTCCGGACTCAATGCAAGCTCAAGAACTCAAGGTCAGCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

73

Amino Acids

7.77

Weight (kDa)

5.64

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018684)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha	Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana	Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AccIII	TCCGGA	2 cut(s)	50, 179
AciI	CCGC	2 cut(s)	30, 32
AcyI	GRCGYC	2 cut(s)	27, 39
AfiI	CCNNNNNNNGG	2 cut(s)	166, 179
AluBI	AGCT	4 cut(s)	56, 119, 195, 214
AluI	AGCT	4 cut(s)	56, 119, 195, 214
Aor13HI	TCCGGA	2 cut(s)	50, 179
AspLEI	GCGC	2 cut(s)	66, 136
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	28
BfoI	RGCGCY	2 cut(s)	67, 137
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	6, 171
BoxI	GACNNNNGTC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	2 cut(s)	181, 189
BsaHI	GRCGYC	2 cut(s)	27, 39
BsaJI	CCNNGG	2 cut(s)	30, 42
BsaWI	WCCGGW	3 cut(s)	50, 139, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 179
BseAI	TCCGGA	2 cut(s)	50, 179
BseDI	CCNNGG	2 cut(s)	30, 42
BseLI	CCNNNNNNNGG	2 cut(s)	166, 179
BseMII	CTCAG	3 cut(s)	48, 120, 156
Bsh1236I	CGCG	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	51, 140, 180
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	166, 179
BsmFI	GGGAC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	103
Bsp13I	TCCGGA	2 cut(s)	50, 179
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	2 cut(s)	30, 32
BspCNI	CTCAG	3 cut(s)	49, 121, 157
BspEI	TCCGGA	2 cut(s)	50, 179
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	6, 171
BspT104I	TTCGAA	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	30, 42
BssNI	GRCGYC	2 cut(s)	27, 39
BssT1I	CCWWGG	1 cut(s)	42
BstACI	GRCGYC	2 cut(s)	27, 39
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	57, 129, 165
BstDSI	CCRYGG	2 cut(s)	30, 42
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	2 cut(s)	67, 137
BstHHI	GCGC	2 cut(s)	66, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstPAI	GACNNNNGTC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	32
BtgI	CCRYGG	2 cut(s)	30, 42
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	66, 136
Cfr13I	GGNCC	1 cut(s)	169
Cfr42I	CCGCGG	1 cut(s)	33
CseI	GACGC	2 cut(s)	35, 47
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	5, 56, 119, 195, 214
CviKI_1	RGCY	5 cut(s)	5, 56, 119, 195, 214
DdeI	CTNAG	3 cut(s)	57, 129, 165
Eco130I	CCWWGG	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 122
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	2 cut(s)	65, 135
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	2 cut(s)	67, 137
HapII	CCGG	3 cut(s)	51, 140, 180
HgaI	GACGC	2 cut(s)	35, 47
HhaI	GCGC	2 cut(s)	66, 136
Hin1I	GRCGYC	2 cut(s)	27, 39
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	2 cut(s)	64, 134
HinP1I	GCGC	2 cut(s)	64, 134
HinfI	GANTC	2 cut(s)	176, 183
HpaII	CCGG	3 cut(s)	51, 140, 180
HphI	GGTGA	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	51, 180, 198
HpyCH4V	TGCA	2 cut(s)	124, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	57, 129, 165
Hsp92I	GRCGYC	2 cut(s)	27, 39
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	2 cut(s)	64, 134
Kpn2I	TCCGGA	2 cut(s)	50, 179
KspI	CCGCGG	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	10, 53
LpnPI	CCDG	5 cut(s)	64, 153, 173, 186, 193
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	170, 177
MnlI	CCTC	6 cut(s)	18, 28, 85, 92, 124, 160
MroI	TCCGGA	2 cut(s)	50, 179
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	3 cut(s)	51, 140, 180
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	6, 171
NspV	TTCGAA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	170, 177
PpsI	GAGTC	2 cut(s)	170, 177
PpuMI	RGGWCCY	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	6, 171
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	170, 177
SetI	ASST	7 cut(s)	58, 121, 162, 171, 197, 211, 216
Sfr303I	CCGCGG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	103
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	196, 204
SmoI	CTYRAG	2 cut(s)	196, 204
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	2 cut(s)	30, 32
StyI	CCWWGG	1 cut(s)	42
TaqI	TCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	96
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.