Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018684

Physical Location & Seq

Genomic Coordinates Forward (+)

4733953 .. 4743649

Gene Structure 9697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG025000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGCTCCTCACGGCGACAAATCGGACGCTGCGGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCCCCATTTCCTCCGTCCTCATCGTCATCGGTTTCCGAAAGGAGTTCCTTGGGTTTGGTATCATGGTTTTTACAAAGATCTTGAGATTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

52

Amino Acids

5.66

Weight (kDa)

8.21

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018684)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha	Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana	Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	39
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	67
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 112
BsaWI	WCCGGW	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	42, 112
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	42, 112
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	42, 112
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	66
CseI	GACGC	2 cut(s)	35, 47
CviAII	CATG	2 cut(s)	43, 127
CviJI	RGCY	2 cut(s)	5, 56
CviKI_1	RGCY	2 cut(s)	5, 56
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	42, 112
EcoT14I	CCWWGG	2 cut(s)	42, 112
ErhI	CCWWGG	2 cut(s)	42, 112
FaeI	CATG	2 cut(s)	46, 130
FaiI	YATR	2 cut(s)	44, 128
FatI	CATG	2 cut(s)	42, 126
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	157
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	67
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	35, 47
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	46, 130
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	25, 101
Hpy188III	TCNNGA	2 cut(s)	51, 145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	46, 130
HspAI	GCGC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	10, 53
LpnPI	CCDG	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	157
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MflI	RGATCY	1 cut(s)	141
MnlI	CCTC	4 cut(s)	18, 28, 85, 92
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	1 cut(s)	152
MspI	CCGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	46, 130
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	141
SetI	ASST	1 cut(s)	58
SgeI	CNNG	5 cut(s)	23, 55, 63, 125, 139
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	42, 112
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	152
XspI	CTAG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.