Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018684

Physical Location & Seq

Genomic Coordinates Reverse (-)

2714067 .. 2716872

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACTCCTCACGGCGACAAATCGGACGCTGCGGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCCCCATTTCCTCCGTCCTCATCGTCATCGCTATGCAGACTGAGGCGCTTCCGGTGGTGAATAAGTTTAACCTCACTGAGGTCCCTGACTCCGGGTTTCCGAAAGGAGTTCCTTGGGTTCGGTATCATGGTTTTTACAAAGATCTTGAGATTAATCTAGTGTGGCCTGGAAAAGATGAATCTTTGGCTGTGCAAGTGGAAATCCTTTGTCAAGTCATGCGTATAATACTGTTGGATTCAAGCAGGAATCAGTTAAATAGGAGGGCCCTTCAGAATTGTTATACCTATTGCCAAATTCCAAAATGCTTTATACGGGATGTTGGCATGAGGTTTGGAATTATGTTTGAGACAGAGGACTCCGACATGTGCAAAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCATTCAGAGCTTTGACAAAGCATTAGCCATCAAGATTCAATCACAGGATGTTGGGTACAAAGTTGCTTCATATATAGATTGTGCAGGAGGGGAAAAGATACAGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

192

Amino Acids

21.51

Weight (kDa)

5.09

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018684)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha	Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana	Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	142, 155
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	303, 506
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	3 cut(s)	56, 437, 477
AluI	AGCT	3 cut(s)	56, 437, 477
Alw26I	GTCTC	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	227, 327
ApaI	GGGCCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	357
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	66, 112
AspS9I	GGNCC	3 cut(s)	145, 327, 328
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	67, 113
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	157, 231
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	145, 327, 328
BmiI	GGNNCC	3 cut(s)	147, 329, 456
BmrFI	CCNGG	2 cut(s)	157, 231
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 176
BsaWI	WCCGGW	2 cut(s)	50, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 155
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	42, 176
BseGI	GGATG	2 cut(s)	385, 520
BseLI	CCNNNNNNNGG	2 cut(s)	142, 155
BseMII	CTCAG	4 cut(s)	48, 96, 132, 452
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	229, 329
BsiSI	CCGG	3 cut(s)	51, 116, 156
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	142, 155
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	229, 329
Bsp120I	GGGCCC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	229, 329
BspCNI	CTCAG	4 cut(s)	49, 97, 133, 451
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	147, 329, 456
BssECI	CCNNGG	2 cut(s)	42, 176
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	42, 176
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	294, 570
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	57, 105, 141, 438
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	385, 520
BstH2I	RGCGCY	2 cut(s)	67, 113
BstHHI	GCGC	2 cut(s)	66, 112
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	155, 229
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	229, 329
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	385, 520
BtsIMutI	CAGTG	1 cut(s)	138
CfoI	GCGC	2 cut(s)	66, 112
Cfr13I	GGNCC	3 cut(s)	145, 327, 328
CseI	GACGC	2 cut(s)	35, 47
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	6 cut(s)	43, 191, 280, 388, 427, 574
CviJI	RGCY	7 cut(s)	56, 229, 251, 329, 437, 477, 494
CviKI_1	RGCY	7 cut(s)	56, 229, 251, 329, 437, 477, 494
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	4 cut(s)	57, 105, 141, 438
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	42, 176
Eco24I	GRGCYC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	3 cut(s)	145, 327, 328
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	42, 176
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	42, 176
FaeI	CATG	6 cut(s)	46, 194, 283, 391, 430, 577
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	42, 190, 279, 387, 426, 573
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	392, 527
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	65, 111
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	2 cut(s)	67, 113
HaeIII	GGCC	2 cut(s)	229, 329
HapII	CCGG	3 cut(s)	51, 116, 156
HgaI	GACGC	2 cut(s)	35, 47
HhaI	GCGC	2 cut(s)	66, 112
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	46, 194, 283, 391, 430, 577
Hin6I	GCGC	2 cut(s)	64, 110
HinP1I	GCGC	2 cut(s)	64, 110
HinfI	GANTC	7 cut(s)	4, 152, 242, 299, 310, 419, 502
HpaII	CCGG	3 cut(s)	51, 116, 156
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	5 cut(s)	25, 165, 336, 424, 474
Hpy188III	TCNNGA	3 cut(s)	51, 209, 499
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	294, 570
HpyCH4V	TGCA	4 cut(s)	100, 256, 432, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	4 cut(s)	57, 105, 141, 438
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	6 cut(s)	46, 194, 283, 391, 430, 577
HspAI	GCGC	2 cut(s)	64, 110
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	221
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	3 cut(s)	337, 357, 399
MlyI	GAGTC	2 cut(s)	146, 413
MmeI	TCCRAC	2 cut(s)	276, 447
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	4 cut(s)	132, 216, 317, 443
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	3 cut(s)	51, 116, 156
MspR9I	CCNGG	2 cut(s)	157, 231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	6 cut(s)	46, 194, 283, 391, 430, 577
NlaIV	GGNNCC	3 cut(s)	147, 329, 456
NspI	RCATGY	1 cut(s)	430
PciI	ACATGT	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	242, 299, 310, 502
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	146, 413
PpsI	GAGTC	2 cut(s)	146, 413
PpuMI	RGGWCCY	1 cut(s)	145
PscI	ACATGT	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	147, 329, 456
PspOMI	GGGCCC	1 cut(s)	327
PspPI	GGNCC	3 cut(s)	145, 327, 328
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	132, 216, 317, 443
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	3 cut(s)	145, 327, 328
SchI	GAGTC	2 cut(s)	146, 413
ScrFI	CCNGG	2 cut(s)	157, 231
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	8 cut(s)	58, 138, 147, 350, 395, 439, 460, 479
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	337, 357, 399
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	155, 229
StyI	CCWWGG	2 cut(s)	42, 176
TaaI	ACNGT	2 cut(s)	294, 570
TasI	AATT	3 cut(s)	337, 357, 399
TfiI	GAWTC	4 cut(s)	242, 299, 310, 502
Tru1I	TTAA	4 cut(s)	132, 216, 317, 443
Tru9I	TTAA	4 cut(s)	132, 216, 317, 443
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	255, 525, 562
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	357
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.