Rmu_sc0003026.1_g000002

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003026.1
OG0019868
Physical Location & Seq
Forward (+)
8961 .. 10980
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 687 bp
atgaatgggaatgtggaatcatactatggagatgctggaaaagcatacattaactggtctgcaaattttgctgaatcactaaacatcggagttccatggattatgtgtcaacaatcaatgataaacacatgtaatggctggtattgtgacacattcaagccaagtaaccccaacactcctaagatgtggactgaaaattggactggctggttcaagagctggggtggttcagacccactcaggactgttgaggacgttgcctttgcagtagcaaggtttttccaatttgaaggcacattccaaaactattacatggtaaacacccaaactacagtgaaagtaaaaagtgttaacaaggctgtgggtgaacctgaatcccttcattggtcatggaggcccgagaagacggatgacacccagcttcttggaaaaggtgaagttgtggaaaatcatcttatggaacaaaaaatgctgcaaatgatgctagtgattatctttggttctcaatgggctgcttataacgtgttcaactacgttttcgagaaacctatcaggttggttcccggagtgaacacaatttcattgctcagtgctactgttggatttccggttcgtaccaattatgacaagacccgcccggatttcatcaccctaaaatctgaagtggccctacagggcccaccttag

Protein Analysis

228

Amino Acids

26.0

Weight (kDa)

5.75

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 6 - 106 1.3e-17 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019868)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0095601 RchiOBHm_Chr2g0095621
rosa_multiflora Rmu_co8127886.1_g000001 Rmu_sc0003026.1_g000002
rosa_roxburghii Rroxscaffold_2G00146160
rosa_samantha Rh2AG100500 Rh2DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AciI CCGC 1 cut(s) 634
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 2 cut(s) 128, 522
AgsI TTSAA 4 cut(s) 157, 214, 290, 529
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
AluBI AGCT 2 cut(s) 219, 421
AluI AGCT 2 cut(s) 219, 421
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 3 cut(s) 395, 666, 676
ApaI GGGCCC 1 cut(s) 680
ApeKI GCWGC 2 cut(s) 472, 512
ApoI RAATTY 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 4 cut(s) 396, 667, 676, 677
AsuC2I CCSGG 2 cut(s) 564, 638
AsuHPI GGTGA 3 cut(s) 377, 446, 640
AvaI CYCGRG 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 680
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 2 cut(s) 459, 499
BcnI CCSGG 2 cut(s) 564, 638
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 2 cut(s) 330, 671
BisI GCNGC 2 cut(s) 473, 513
BlsI GCNGC 2 cut(s) 474, 514
Bme1390I CCNGG 2 cut(s) 564, 638
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 396, 667, 676, 677
BmiI GGNNCC 2 cut(s) 561, 678
BmrFI CCNGG 2 cut(s) 564, 638
BmsI GCATC 2 cut(s) 22, 471
BpiI GAAGAC 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 564, 638
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 59, 208
Bse3DI GCAATG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 581
BseMII CTCAG 2 cut(s) 253, 601
BseNI ACTGG 2 cut(s) 59, 208
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 2 cut(s) 459, 499
BseYI CCCAGC 2 cut(s) 219, 417
BshFI GGCC 3 cut(s) 397, 668, 678
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 3 cut(s) 564, 608, 638
BslI CCNNNNNNNGG 1 cut(s) 384
BsnI GGCC 3 cut(s) 397, 668, 678
BsoBI CYCGRG 1 cut(s) 398
Bsp120I GGGCCC 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 680
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 1 cut(s) 634
BspANI GGCC 3 cut(s) 397, 668, 678
BspCNI CTCAG 2 cut(s) 252, 600
BspLI GGNNCC 2 cut(s) 561, 678
BsrDI GCAATG 1 cut(s) 581
BsrI ACTGG 2 cut(s) 59, 208
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 247, 334, 598
BstAPI GCANNNNNTGC 2 cut(s) 68, 481
BstDEI CTNAG 4 cut(s) 180, 239, 587, 684
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 41, 68, 481
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 562, 636
BstSFI CTRYAG 2 cut(s) 330, 671
BstSLI GKGCMC 1 cut(s) 680
BstV1I GCAGC 2 cut(s) 459, 499
BstV2I GAAGAC 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 425
BsuRI GGCC 3 cut(s) 397, 668, 678
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 339, 595
Cfr13I GGNCC 4 cut(s) 396, 667, 676, 677
Csp6I GTAC 1 cut(s) 615
CviAII CATG 4 cut(s) 96, 129, 313, 390
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 4 cut(s) 180, 239, 587, 684
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 4 cut(s) 99, 132, 316, 393
FatI CATG 4 cut(s) 95, 128, 312, 389
FauI CCCGC 1 cut(s) 641
Fnu4HI GCNGC 2 cut(s) 473, 513
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 2 cut(s) 473, 513
FspBI CTAG 1 cut(s) 485
GluI GCNGC 2 cut(s) 473, 513
GsaI CCCAGC 2 cut(s) 223, 421
HaeIII GGCC 3 cut(s) 397, 668, 678
HapII CCGG 3 cut(s) 564, 608, 638
Hin1II CATG 4 cut(s) 99, 132, 316, 393
HincII GTYRAC 2 cut(s) 110, 352
HindII GTYRAC 2 cut(s) 110, 352
HinfI GANTC 3 cut(s) 17, 74, 374
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 3 cut(s) 564, 608, 638
HphI GGTGA 3 cut(s) 377, 446, 640
Hpy166II GTNNAC 6 cut(s) 110, 189, 319, 352, 368, 571
Hpy188I TCNGA 3 cut(s) 89, 232, 661
Hpy188III TCNNGA 3 cut(s) 214, 241, 541
Hpy8I GTNNAC 6 cut(s) 110, 189, 319, 352, 368, 571
HpyAV CCTTC 2 cut(s) 284, 389
HpyCH4III ACNGT 3 cut(s) 247, 334, 598
HpyCH4IV ACGT 3 cut(s) 255, 522, 534
HpyCH4V TGCA 3 cut(s) 62, 266, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 68, 481
HpyF3I CTNAG 4 cut(s) 180, 239, 587, 684
HpySE526I ACGT 3 cut(s) 255, 522, 534
Hsp92II CATG 4 cut(s) 99, 132, 316, 393
KspAI GTTAAC 1 cut(s) 352
Lsp1109I GCAGC 2 cut(s) 459, 499
LweI GCATC 2 cut(s) 22, 471
MaeI CTAG 1 cut(s) 485
MaeII ACGT 3 cut(s) 255, 522, 534
MaeIII GTNAC 2 cut(s) 146, 164
MboII GAAGA 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 5 cut(s) 64, 196, 284, 576, 619
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 2 cut(s) 244, 387
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 2 cut(s) 51, 351
MspI CCGG 3 cut(s) 564, 608, 638
MspR9I CCNGG 2 cut(s) 564, 638
MwoI GCNNNNNNNGC 3 cut(s) 41, 68, 481
NciI CCSGG 2 cut(s) 564, 638
NcoI CCATGG 1 cut(s) 95
NlaIII CATG 4 cut(s) 99, 132, 316, 393
NlaIV GGNNCC 2 cut(s) 561, 678
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 132
PciI ACATGT 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 17, 74, 374
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 2 cut(s) 474, 514
PscI ACATGT 1 cut(s) 128
PsiI TTATAA 1 cut(s) 519
PspFI CCCAGC 2 cut(s) 219, 417
PspN4I GGNNCC 2 cut(s) 561, 678
PspOMI GGGCCC 1 cut(s) 676
PspPI GGNCC 4 cut(s) 396, 667, 676, 677
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 2 cut(s) 51, 351
SatI GCNGC 2 cut(s) 473, 513
Sau96I GGNCC 4 cut(s) 396, 667, 676, 677
ScrFI CCNGG 2 cut(s) 564, 638
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 2 cut(s) 22, 471
SfcI CTRYAG 2 cut(s) 330, 671
Sse9I AATT 5 cut(s) 64, 196, 284, 576, 619
SsiI CCGC 1 cut(s) 634
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 562, 636
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 247, 334, 598
TaiI ACGT 3 cut(s) 258, 525, 537
TaqI TCGA 1 cut(s) 540
TasI AATT 5 cut(s) 64, 196, 284, 576, 619
TfiI GAWTC 3 cut(s) 17, 74, 374
Tru1I TTAA 2 cut(s) 51, 351
Tru9I TTAA 2 cut(s) 51, 351
TscAI CASTG 2 cut(s) 339, 595
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 472, 512
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 4 cut(s) 17, 371, 570, 634
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 339, 595
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.