Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003115.1

Orthogroup ID

OG0012648

Physical Location & Seq

Genomic Coordinates Forward (+)

188308 .. 191619

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003115.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

atggccaatgggactcaaatccatgagagggtgcctgagaatctaaggaaacagtttgctgttgctgtcaggagtattaagtggagctatgctattttctggtcattgtcaacaacacaacaaggggtgctggaatggggtgaagggtactacaatggagacatcaaaactaggaagacggtcgaaggaatagaacctaaagctgataaaataggtctgcagaggaatgaacaacttagagagttgtataaggctctcttagaaggcgagtcaacggaccaacaagcaaaagtgccttctgctgcattgtctccagaggatctcacagatgcggagtggtattacttgctttgcatgtcattcgtgttcaatattggcgaaggtttgccaggaagagcattagcaaacgggaaaagcatttggttatgcaatgctcaatatgcggatagcaaagtattttctcgttctttgttagcaaagactgtggtctgctttccctatcttggaggtgttgttgagctaggtgtgacggagctggtagcagaggaccctagtctccttcaacacatcaaggcttccttactagatttctcaaagccagattgctccgagaaagcttcctctgcacctcacaaagcagatgaagactcagaccaaatacttgccaacattgtaggccatgaaatagttgatacattgggtttggagaacctatattccccttcacaagaactcaaatttgatcagagtggaattaatggattacacggacatgatgaagagttcagcatgggctctgctgatgaatgttccaggggatgtgagcacaatcatcagacagaagactcctttatgcttgaagctgtcaatggtggggcttctcaagttcagagttggcatttcatggatgatgatttcagcaatggatttcaagattccatgaattctagtgactgtatatctgaagcttttgttaatcaaggaaaggctcattcttctactagacctgagaataagaatcatagtcatttaaaagaacttcagaacttcaatgacacaaaattcagctccttggatcttggaccagctgatgatcatttacactacaaaagaactctttctgctattctggggaactcaatgcggataattgaaaacccatatttttgcagtggaagtggaaaatctagttttgtgcaatggaagaaaggagttgtttataaatgtagcccaaaagctcagcagaaactgttaaagaagattttgtttacagttccattgatgatgagtggcggctctcctagtccccaaaaagaaactactacaaactccaaatcagaaagtgatgatatgcacgagaaaatgagagagaatgaaaagttgttggtcctgaggtcaatggttccttctatgactgagattgacagggcatcaatcctcgatgacacgattaagtatttgaaagagcttgaggcaagagcagaagagatagaatcttgcatggacactgtggaagcaatagctagaaggaaattcctagaaagggcagagaaggcatcagataactatgacaaaacaaagactggcaatgctaaaaagccttggataaacaagcggaaggcctgtgacattgatgaaagtgacccagaacttaataggcttgtctccaaagaaagcttaccactagatgtgaaagtcagtgtaaaagagcaggaggttctgatcgagatgagatgcccttatagggaatacatcttacttgatataatggatgctgttaacagtctgtacttagatgcccactcagtgcaatcatccaccctcaatgatgttctcacattgagccttaaatcaaagtttcgaggatcagcaattgcacctgtggggatgataaaacaagcactttggaaaattgctggtaagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

642

Amino Acids

71.74

Weight (kDa)

5.43

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14230 FvH4_7g14230 FvH4_7g14230
malus_domestica	MD01G1060200.v1.1 MD07G1137500.v1.1
prunus_persica	Prupe.2G170100_v2.0.a1 Prupe.2G170100_v2.0.a1
pyrus_communis	pycom01g09030 pycom07g13540
rosa_chinensis	RchiOBHm_Chr1g0355211
rosa_laevigata	RLG00000028171
rosa_multiflora	Rmu_sc0003115.1_g000041
rosa_roxburghii	Rroxscaffold_4G00300600
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG258000 Rh1BG227600 Rh1CG241700 Rh1DG255400
rosa_wichuraiana	Rw1G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1221
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	5 cut(s)	332, 443, 1144, 1293, 1615
AclWI	GGATC	3 cut(s)	327, 1083, 1873
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	737, 943, 1061, 1532
AcuI	CTGAAG	2 cut(s)	984, 1025
AdeI	CACNNNGTG	1 cut(s)	1807
AfaI	GTAC	2 cut(s)	149, 1790
AfiI	CCNNNNNNNGG	4 cut(s)	28, 503, 1543, 1744
AgsI	TTSAA	7 cut(s)	370, 563, 860, 932, 1051, 1154, 1462
AjnI	CCWGG	2 cut(s)	388, 812
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	4 cut(s)	153, 315, 560, 1669
AlwI	GGATC	3 cut(s)	327, 1083, 1873
AlwNI	CAGNNNCTG	1 cut(s)	1249
AoxI	GGCC	3 cut(s)	3, 676, 1620
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	4 cut(s)	737, 943, 1061, 1532
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	1117
AspS9I	GGNCC	4 cut(s)	277, 547, 1082, 1387
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	4 cut(s)	277, 547, 1082, 1387
AxyI	CCTNAGG	1 cut(s)	1391
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	797
BauI	CACGAG	1 cut(s)	1355
BbsI	GAAGAC	3 cut(s)	182, 651, 849
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciT130I	CCWGG	2 cut(s)	390, 814
BclI	TGATCA	2 cut(s)	742, 1093
BcoDI	GTCTC	4 cut(s)	153, 315, 560, 1669
BfmI	CTRYAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	303, 1294
BlpI	GCTNAGC	1 cut(s)	1239
BlsI	GCNGC	2 cut(s)	304, 1295
Bme1390I	CCNGG	2 cut(s)	390, 814
Bme18I	GGWCC	4 cut(s)	277, 547, 1082, 1387
BmgT120I	GGNCC	4 cut(s)	277, 547, 1082, 1387
BmiI	GGNNCC	3 cut(s)	33, 549, 1404
BmrFI	CCNGG	2 cut(s)	390, 814
BmsI	GCATC	6 cut(s)	319, 1439, 1565, 1724, 1762, 1786
BoxI	GACNNNNGTC	2 cut(s)	485, 552
BpiI	GAAGAC	3 cut(s)	182, 651, 849
BpmI	CTGGAG	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	1239
BpuEI	CTTGAG	2 cut(s)	867, 1490
BsaJI	CCNNGG	3 cut(s)	813, 1071, 1601
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 503, 1543, 1744
Bse1I	ACTGG	1 cut(s)	1588
Bse21I	CCTNAGG	1 cut(s)	1391
Bse3DI	GCAATG	4 cut(s)	436, 928, 1205, 1594
BseBI	CCWGG	2 cut(s)	390, 814
BseDI	CCNNGG	3 cut(s)	813, 1071, 1601
BseGI	GGATG	5 cut(s)	824, 913, 1777, 1814, 1893
BseLI	CCNNNNNNNGG	4 cut(s)	28, 503, 1543, 1744
BseMI	GCAATG	4 cut(s)	436, 928, 1205, 1594
BseMII	CTCAG	7 cut(s)	27, 663, 999, 1253, 1382, 1407, 1818
BseNI	ACTGG	1 cut(s)	1588
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	609
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	5, 678, 1622
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	828
BslFI	GGGAC	2 cut(s)	25, 1290
BslI	CCNNNNNNNGG	4 cut(s)	28, 503, 1543, 1744
BsmAI	GTCTC	4 cut(s)	153, 315, 560, 1669
BsmFI	GGGAC	2 cut(s)	25, 1290
BsnI	GGCC	3 cut(s)	5, 678, 1622
Bsp1286I	GDGCHC	2 cut(s)	797, 828
Bsp143I	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
Bsp1720I	GCTNAGC	1 cut(s)	1239
BspACI	CCGC	5 cut(s)	332, 443, 1144, 1293, 1615
BspANI	GGCC	3 cut(s)	5, 678, 1622
BspCNI	CTCAG	7 cut(s)	28, 662, 1000, 1252, 1383, 1408, 1817
BspLI	GGNNCC	3 cut(s)	33, 549, 1404
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	3 cut(s)	327, 1083, 1873
BspQI	GCTCTTC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	31
BsrDI	GCAATG	4 cut(s)	436, 928, 1205, 1594
BsrI	ACTGG	1 cut(s)	1588
BssECI	CCNNGG	3 cut(s)	813, 1071, 1601
BssMI	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
BssSI	CACGAG	1 cut(s)	1355
BssT1I	CCWWGG	2 cut(s)	1071, 1601
Bst2BI	CACGAG	1 cut(s)	1355
Bst2UI	CCWGG	2 cut(s)	390, 814
Bst4CI	ACNGT	8 cut(s)	54, 181, 484, 956, 1251, 1273, 1510, 1784
Bst6I	CTCTTC	3 cut(s)	388, 774, 1479
BstF5I	GGATG	5 cut(s)	824, 913, 1777, 1814, 1893
BstKTI	GATC	6 cut(s)	322, 745, 1078, 1096, 1725, 1868
BstMAI	GTCTC	4 cut(s)	153, 315, 560, 1669
BstMBI	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 623, 1553
BstNI	CCWGG	2 cut(s)	390, 814
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	2 cut(s)	485, 552
BstSCI	CCNGG	2 cut(s)	388, 812
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	3 cut(s)	182, 651, 849
BstX2I	RGATCY	2 cut(s)	319, 1075
BstYI	RGATCY	2 cut(s)	319, 1075
Bsu36I	CCTNAGG	1 cut(s)	1391
BsuRI	GGCC	3 cut(s)	5, 678, 1622
BtsCI	GGATG	5 cut(s)	824, 913, 1777, 1814, 1893
BtsI	GCAGTG	1 cut(s)	1177
BtsIMutI	CAGTG	4 cut(s)	1177, 1506, 1705, 1812
CaiI	CAGNNNCTG	1 cut(s)	1249
Cfr13I	GGNCC	4 cut(s)	277, 547, 1082, 1387
Csp6I	GTAC	2 cut(s)	148, 1789
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	8 cut(s)	23, 355, 680, 773, 790, 904, 940, 1501
CviQI	GTAC	2 cut(s)	148, 1789
DpnI	GATC	6 cut(s)	321, 744, 1077, 1095, 1724, 1867
DpnII	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
DraI	TTTAAA	1 cut(s)	1032
DraIII	CACNNNGTG	1 cut(s)	1807
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	388, 774, 1479
EarI	CTCTTC	3 cut(s)	388, 774, 1479
Eco130I	CCWWGG	2 cut(s)	1071, 1601
Eco147I	AGGCCT	1 cut(s)	1622
Eco24I	GRGCYC	1 cut(s)	797
Eco47I	GGWCC	4 cut(s)	277, 547, 1082, 1387
Eco57I	CTGAAG	2 cut(s)	984, 1025
Eco81I	CCTNAGG	1 cut(s)	1391
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	943
EcoRII	CCWGG	2 cut(s)	388, 812
EcoT14I	CCWWGG	2 cut(s)	1071, 1601
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	2 cut(s)	1071, 1601
FaeI	CATG	8 cut(s)	26, 358, 683, 776, 793, 907, 943, 1504
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 563, 595
FaqI	GGGAC	2 cut(s)	25, 1290
FatI	CATG	8 cut(s)	22, 354, 679, 772, 789, 903, 939, 1500
FbaI	TGATCA	2 cut(s)	742, 1093
Fnu4HI	GCNGC	2 cut(s)	303, 1294
FokI	GGATG	5 cut(s)	831, 920, 1784, 1801, 1900
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	2 cut(s)	303, 1294
GluI	GCNGC	2 cut(s)	303, 1294
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	5, 678, 1622
Hin1II	CATG	8 cut(s)	26, 358, 683, 776, 793, 907, 943, 1504
HincII	GTYRAC	3 cut(s)	111, 273, 1780
HindII	GTYRAC	3 cut(s)	111, 273, 1780
HindIII	AAGCTT	3 cut(s)	615, 966, 1675
HinfI	GANTC	8 cut(s)	13, 40, 269, 647, 845, 935, 1018, 1493
HpaI	GTTAAC	1 cut(s)	1780
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	4 cut(s)	111, 273, 1269, 1780
Hpy188III	TCNNGA	5 cut(s)	70, 314, 932, 1390, 1726
Hpy8I	GTNNAC	4 cut(s)	111, 273, 1269, 1780
HpyCH4III	ACNGT	8 cut(s)	54, 181, 484, 956, 1251, 1273, 1510, 1784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 623, 1553
Hsp92II	CATG	8 cut(s)	26, 358, 683, 776, 793, 907, 943, 1504
Ksp22I	TGATCA	2 cut(s)	742, 1093
KspAI	GTTAAC	1 cut(s)	1780
Kzo9I	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
LguI	GCTCTTC	1 cut(s)	388
LmnI	GCTCC	4 cut(s)	84, 532, 611, 1073
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	6 cut(s)	319, 1439, 1565, 1724, 1762, 1786
MaeIII	GTNAC	4 cut(s)	526, 950, 1625, 1640
MalI	GATC	6 cut(s)	321, 744, 1077, 1095, 1724, 1867
MboI	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
MboII	GAAGA	9 cut(s)	187, 405, 656, 791, 854, 987, 1216, 1270, 1496
MfeI	CAATTG	1 cut(s)	1872
MflI	RGATCY	2 cut(s)	319, 1075
MhlI	GDGCHC	2 cut(s)	797, 828
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	737, 753, 943, 1061, 1149, 1532, 1872, 1911
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	7, 278, 641, 839
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	1117
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	9 cut(s)	78, 756, 975, 1031, 1253, 1452, 1653, 1779, 1848
MslI	CAYNNNNRTG	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1088
MspR9I	CCNGG	2 cut(s)	390, 814
MunI	CAATTG	1 cut(s)	1872
MvaI	CCWGG	2 cut(s)	390, 814
MwoI	GCNNNNNNNGC	3 cut(s)	440, 623, 1553
NdeII	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
NlaIII	CATG	8 cut(s)	26, 358, 683, 776, 793, 907, 943, 1504
NlaIV	GGNNCC	3 cut(s)	33, 549, 1404
NmuCI	GTSAC	4 cut(s)	526, 950, 1625, 1640
NspI	RCATGY	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	1622
PciSI	GCTCTTC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	1117
PfeI	GAWTC	4 cut(s)	40, 935, 1018, 1493
PkrI	GCNGC	2 cut(s)	304, 1295
PleI	GAGTC	4 cut(s)	7, 277, 641, 839
PpsI	GAGTC	4 cut(s)	7, 277, 641, 839
PpuMI	RGGWCCY	1 cut(s)	547
PshAI	GACNNNNGTC	2 cut(s)	485, 552
PshBI	ATTAAT	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	388, 812
PspGI	CCWGG	2 cut(s)	388, 812
PspN4I	GGNNCC	3 cut(s)	33, 549, 1404
PspPI	GGNCC	4 cut(s)	277, 547, 1082, 1387
PspPPI	RGGWCCY	1 cut(s)	547
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	1249
PsuI	RGATCY	2 cut(s)	319, 1075
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	2 cut(s)	149, 1790
RsaNI	GTAC	2 cut(s)	148, 1789
RseI	CAYNNNNRTG	1 cut(s)	771
SapI	GCTCTTC	1 cut(s)	388
SaqAI	TTAA	9 cut(s)	78, 756, 975, 1031, 1253, 1452, 1653, 1779, 1848
SatI	GCNGC	2 cut(s)	303, 1294
Sau3AI	GATC	6 cut(s)	319, 742, 1075, 1093, 1722, 1865
Sau96I	GGNCC	4 cut(s)	277, 547, 1082, 1387
SchI	GAGTC	4 cut(s)	7, 278, 641, 839
ScrFI	CCNGG	2 cut(s)	390, 814
SduI	GDGCHC	2 cut(s)	797, 828
SfaNI	GCATC	6 cut(s)	319, 1439, 1565, 1724, 1762, 1786
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	4 cut(s)	277, 547, 1082, 1387
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	2 cut(s)	882, 1469
SmoI	CTYRAG	2 cut(s)	882, 1469
Sse9I	AATT	8 cut(s)	737, 753, 943, 1061, 1149, 1532, 1872, 1911
SseBI	AGGCCT	1 cut(s)	1622
SsiI	CCGC	5 cut(s)	332, 443, 1144, 1293, 1615
SspI	AATATT	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	1622
StyD4I	CCNGG	2 cut(s)	388, 812
StyI	CCWWGG	2 cut(s)	1071, 1601
TaaI	ACNGT	8 cut(s)	54, 181, 484, 956, 1251, 1273, 1510, 1784
TaqI	TCGA	4 cut(s)	183, 1440, 1725, 1861
TasI	AATT	8 cut(s)	737, 753, 943, 1061, 1149, 1532, 1872, 1911
TatI	WGTACW	1 cut(s)	1788
TauI	GCSGC	1 cut(s)	1296
TfiI	GAWTC	4 cut(s)	40, 935, 1018, 1493
Tru1I	TTAA	9 cut(s)	78, 756, 975, 1031, 1253, 1452, 1653, 1779, 1848
Tru9I	TTAA	9 cut(s)	78, 756, 975, 1031, 1253, 1452, 1653, 1779, 1848
TscAI	CASTG	4 cut(s)	1177, 1513, 1705, 1812
TseFI	GTSAC	4 cut(s)	526, 950, 1625, 1640
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	4 cut(s)	526, 950, 1625, 1640
TspDTI	ATGAA	9 cut(s)	243, 657, 696, 792, 819, 892, 956, 1389, 1650
TspGWI	ACGGA	3 cut(s)	290, 545, 783
TspRI	CASTG	4 cut(s)	1177, 1513, 1705, 1812
VpaK11BI	GGWCC	4 cut(s)	277, 547, 1082, 1387
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	4 cut(s)	737, 943, 1061, 1532
XceI	RCATGY	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.