Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003153.1

Orthogroup ID

OG0009341

Physical Location & Seq

Genomic Coordinates Reverse (-)

65347 .. 65994

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggaagtcgaagcagtggcaagtggagccagttcagcatctggggcactgcctgcaaagccaagttttgagcctttaaaggctcatgagatgtcagatgggcaagttcagttccggaaggtctctgttccaccgcatcgttatacgccactgaagaaagcatggatggaaatatacaccccaatttatgagcagatgaagatagacatccgtatgaatctcaagggccgcaaagtggagttgaagaccagacgtgacacacctgacattagtcatctgcagaagtgtgctgactttgttcaggctttcatgctggggtttgatgtcatagatgccattgcccttctacgtttggacgagctttatgtggagtcctttgagatcaaggacgtcaaaacacttcgtggggagcacttgtctcgcgctataggaaggctgtctgggaaaggtggcagaacaaaattcgcgattgagaatgctacaaagactaggattgtgattgcagacaccaagatccacatattgggatcttttgcaaacataaaggttgctagggactctctttgcaaccttatcttaggatcccctgctgctaaagtgtattcaaaactaagagcggttactgccagattggcagaaaggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

215

Amino Acids

23.97

Weight (kDa)

9.72

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_PNO1_2nd	PF22891	125 - 208	1.2e-35	Eukaryotic type KH-domain (KH-domain type I)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13230 AT3G13230
fragaria_vesca	FvH4_5g31610 FvH4_5g31610
malus_domestica	MD03G1039400.v1.1 MD11G1039900.v1.1
prunus_persica	Prupe.6G031600_v2.0.a1 Prupe.6G032300_v2.0.a1 Prupe.6G032300_v2.0.a1
pyrus_communis	pycom11g03420
rosa_chinensis	RchiOBHm_Chr7g0227141
rosa_laevigata	RLG00000001665
rosa_multiflora	Rmu_sc0003153.1_g000020 Rmu_sc0029286.1_g000002
rosa_roxburghii	Rroxscaffold_3G00232280
rosa_rugosa	Rorug07G0241000
rosa_samantha	Rh7AG390800 Rh7BG375800 Rh7CG409800 Rh7DG388100
rosa_wichuraiana	Rw0G014510 Rw7G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	617
AccII	CGCG	2 cut(s)	423, 467
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	3 cut(s)	134, 229, 617
AclWI	GGATC	4 cut(s)	508, 535, 576, 589
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	235, 523
AgsI	TTSAA	2 cut(s)	244, 606
AjiI	CACGTC	1 cut(s)	254
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	127, 423
AlwI	GGATC	4 cut(s)	508, 535, 576, 589
AlwNI	CAGNNNCTG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	2 cut(s)	92, 160
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BcoDI	GTCTC	2 cut(s)	127, 423
BfaI	CTAG	2 cut(s)	489, 552
BfmI	CTRYAG	2 cut(s)	278, 426
BglI	GCCNNNNNGGC	1 cut(s)	632
BisI	GCNGC	2 cut(s)	229, 591
BlsI	GCNGC	2 cut(s)	230, 592
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	28, 583
BmsI	GCATC	3 cut(s)	47, 145, 322
BoxI	GACNNNNGTC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 523
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	114
BseGI	GGATG	2 cut(s)	171, 207
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	235, 523
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	577
BseYI	CCCAGC	1 cut(s)	313
Bsh1236I	CGCG	2 cut(s)	423, 467
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	235, 523
BsmAI	GTCTC	2 cut(s)	127, 423
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	49, 414
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	381, 513, 527, 581
Bsp68I	TCGCGA	1 cut(s)	467
BspACI	CCGC	3 cut(s)	134, 229, 617
BspANI	GGCC	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	423, 467
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	28, 583
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	4 cut(s)	508, 535, 576, 589
BspTNI	GGTCTC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	4 cut(s)	381, 513, 527, 581
BssNI	GRCGYC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	577, 611
BstF5I	GGATG	2 cut(s)	171, 207
BstFNI	CGCG	2 cut(s)	423, 467
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	4 cut(s)	384, 516, 530, 584
BstMAI	GTCTC	2 cut(s)	127, 423
BstMBI	GATC	4 cut(s)	381, 513, 527, 581
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 35, 44, 53, 58, 623, 632
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	278, 426
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	2 cut(s)	423, 467
BstV1I	GCAGC	1 cut(s)	577
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	3 cut(s)	513, 527, 581
BstYI	RGATCY	3 cut(s)	513, 527, 581
BsuRI	GGCC	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	171, 207
BtsI	GCAGTG	2 cut(s)	21, 47
BtsIMutI	CAGTG	3 cut(s)	21, 47, 149
BtuMI	TCGCGA	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	41
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	226
CviAII	CATG	3 cut(s)	86, 162, 310
CviJI	RGCY	8 cut(s)	29, 61, 73, 83, 228, 305, 361, 436
CviKI_1	RGCY	8 cut(s)	29, 61, 73, 83, 228, 305, 361, 436
DdeI	CTNAG	2 cut(s)	577, 611
DpnI	GATC	4 cut(s)	383, 515, 529, 583
DpnII	GATC	4 cut(s)	381, 513, 527, 581
DraI	TTTAAA	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	173
FaeI	CATG	3 cut(s)	89, 165, 313
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	3 cut(s)	85, 161, 309
Fnu4HI	GCNGC	2 cut(s)	229, 591
FokI	GGATG	2 cut(s)	178, 194
Fsp4HI	GCNGC	2 cut(s)	229, 591
FspBI	CTAG	2 cut(s)	489, 552
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	2 cut(s)	229, 591
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	425
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	89, 165, 313
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	3 cut(s)	217, 371, 557
HpaII	CCGG	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	86, 115, 466
HpyAV	CCTTC	3 cut(s)	112, 353, 426
HpyCH4IV	ACGT	3 cut(s)	253, 349, 390
HpyCH4V	TGCA	5 cut(s)	56, 280, 503, 536, 567
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 35, 44, 53, 58, 623, 632
HpyF3I	CTNAG	2 cut(s)	577, 611
HpySE526I	ACGT	3 cut(s)	253, 349, 390
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	89, 165, 313
HspAI	GCGC	1 cut(s)	423
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	381, 513, 527, 581
LmnI	GCTCC	2 cut(s)	26, 409
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	3 cut(s)	47, 145, 322
MaeI	CTAG	2 cut(s)	489, 552
MaeII	ACGT	3 cut(s)	253, 349, 390
MaeIII	GTNAC	2 cut(s)	254, 619
MalI	GATC	4 cut(s)	383, 515, 529, 583
MbiI	CCGCTC	1 cut(s)	617
MboI	GATC	4 cut(s)	381, 513, 527, 581
MboII	GAAGA	3 cut(s)	166, 211, 256
MflI	RGATCY	3 cut(s)	513, 527, 581
MhlI	GDGCHC	2 cut(s)	49, 414
MluCI	AATT	2 cut(s)	183, 461
MlyI	GAGTC	2 cut(s)	380, 551
MroI	TCCGGA	1 cut(s)	114
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	481
MvnI	CGCG	2 cut(s)	423, 467
MwoI	GCNNNNNNNGC	7 cut(s)	26, 35, 44, 53, 58, 623, 632
NdeII	GATC	4 cut(s)	381, 513, 527, 581
NlaIII	CATG	3 cut(s)	89, 165, 313
NlaIV	GGNNCC	2 cut(s)	28, 583
NmuCI	GTSAC	1 cut(s)	254
NruI	TCGCGA	1 cut(s)	467
PagI	TCATGA	1 cut(s)	85
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	230, 592
PleI	GAGTC	2 cut(s)	379, 551
PpsI	GAGTC	2 cut(s)	379, 551
PshAI	GACNNNNGTC	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	28, 583
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	513, 527, 581
RruI	TCGCGA	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	229, 591
Sau3AI	GATC	4 cut(s)	381, 513, 527, 581
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	380, 551
SduI	GDGCHC	2 cut(s)	49, 414
SfaNI	GCATC	3 cut(s)	47, 145, 322
SfcI	CTRYAG	2 cut(s)	278, 426
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	183, 461
SsiI	CCGC	3 cut(s)	134, 229, 617
SspMI	CTAG	2 cut(s)	489, 552
TaiI	ACGT	3 cut(s)	256, 352, 393
TaqI	TCGA	1 cut(s)	9
TasI	AATT	2 cut(s)	183, 461
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	3 cut(s)	21, 54, 156
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	212, 230, 298
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	21, 54, 156
Van91I	CCANNNNNTGG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	461
XspI	CTAG	2 cut(s)	489, 552
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.