Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003335.1

Orthogroup ID

OG0008804

Physical Location & Seq

Genomic Coordinates Forward (+)

41779 .. 50816

Gene Structure 9038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3222 bp

atgggcctccatccacaacggggtcgaagtcaaaaactccatcaagcccaccccaaccaaaaacgcccaaagcaggacaaaaaccaagcacaaaccaacagtcacggtctcgttcttcttcactcctttacattccctctctcactcacagtagtcgtcgcacccgtagactccgcaccactgaccaaactctccctctctttgagaatggctacccgaaccctcggggcacttgtggtgctccttttggcgatcgtgatatgtgaagcggcctccgtcttccacccgatctccgactctcaccgatccgccgcttctgagctcttcacccagggatccttcgacagtttagaagaggcgtatgaagccctgagatcgtttgaggttctcgggattgataagcctgatatacgtggcgctacttgtaagtctgttgtggaaaagcttggatcatcggaatctgctccaaaagacttgttctatgccttaaaggttaacagcattttgaagtgtgaggttaagaaggatgtatttgagggcattgcttcaagacttaaagctgtggtaaatggtgcaagctcattgctagacatctattactctattggcagtttggtgcttattaaggatcaaacttctgaggttgatgtacttcttgctgatgctgatggcattttccgatctatcaagtctctgagccagagtgatggaaggtggcgctacagttcagataatccccagtctagtacctatgctgctggattagcgattgaagcacttgctggagttgtttcattagcatcctctgaaattgatcagtctatgattgggaaattaaaaagggatgtttcgaagctttttgacagtgtcgagaaatatgatgatggcgccttttattttgatgaaaaagttgatcagagtcctctttcaactactgcgtcagttgttcgaggactgacagcgttagcagctgtgacgtctgaaaagttaaaggttccaggggagaagattttgggtttggcaaaattcttccttgggattggcattccaggcaataataaagatttctttaaccagattgactctttagcttctttggaaagcaataaggtctccgtccctctgattttatcgcttccaactacagtgctttcattgactaaaaaagaccagctcaaggttaaagtcggtactgtgcttggatcaagtgctcctcctctgaccgttaaattgatgcgagctttcagttctggttcaaaagatgcttccattattgccagccaggaactcaagttcgttaaaaaaagtggataccatgtcctggatgttttgccaaaaagtgttgatgttggaagttacatatttgtctttgaggttgttcttcatgattctgaagacgaaatcgtttatacaactggaggtttggcccaagtagatgtatttgttaccggagttatcaatatagagaatgcagaaatttctgtacttgaaagcgataagagtgtagaaacccagaaaaaattagatttagctggagaaaatgcagtttcactatcagcaaaccacctccaaaagctgcgcctatcctttcaattgactactcctttgggtcatgcttttaagccacatcaggtgtttctcaaattgacacatgagaccaaggttgaacatatgtttgtggtggggaactccggcaaaaaatttgagaaaatactagatttcctcgggttggttgacaagttttactatctctcgggtagttacgaccttcaattaactgttggagatgctgtaatggagaactctttcttacgggctattggccgcattgatttagatctaccagaagcacctgagaaggccacccgccctccttcaccggctgttaaccctttattaaagtatgggcccaaagcagagataagccatattttcagggttccagagaagcttcctcctaaccatctctctcttgctttcttgggtcttctgcttttgccattgattggatttttggttgggctattgcgcttaggagtgaatctgaagaacttccccacgtcagcagttccagccacctttggtattctattccatgttggcattgcagcagttcttttgctctatgtgcttttctggctgaagttggatctatttacaaccctgaaatggcttggattgttgggagttttcttgctgtttgtggggcacaggatcctttcccatctcgcctctacatcatccaagcgaggggatcagggaagtagagaaaaagagttggtgaggaagagcaaggttttgttgtaccagggtcagtttgatatggggcggtttgatatgagatgtggcgtggttgcgaatgaggcttgggtgaagactgaaatgggaggggtacagaggtttctgttggcggataggagagtttggagattgggtggagaggttgctggttatgttcagacctgggagtgggatggtctcaccaaaactagttatttcctggacagacatcgttttcacagctctcgccgtcttctcctcatctcctcgtcctctcttgctgccggaattagtaataagaatggagttggaatctcattacttgctgatgaagaaacggcagtttcaagtttgagtgtacctttcctccccaaggatgcaagatggggtttagaatttgtgggatctagtaatggaaggtttaatattcactctattactgtgaatggagtgctgtattggttggtcgagaaacaaacagctggggtggctctcgtttcgttcagtttacatgatgaggccttcaaggatacatggagaccactaccaggagaaatagtacgctatcttactaagggtattttgttgaagatgcaattaattagatggaaaaattcagttgcagttgaaggctatcttcgggtgcaggagggcgaccaatttgtgatgtgggtggatactacaactgatcaagaaactaacacttgttcttggattcaacaaataagaatcagatggccatcttcgttattccacataggagtttggaaggatcaacatgttttcaccaaaaatggagatgaagctggtgcagataatgatgaaccggggaacttgtttttgtatgaccctataacccagacattaagtaaggtacatgcagaaagaaacgtttgtttttattccgtagtgggttatgcggagagcaacgtccagctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

1073

Amino Acids

118.11

Weight (kDa)

8.18

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_II	PF05817	97 - 367	5.4e-60	Ribophorin II N-terminal domain
Ribophorin_II_2nd	PF23861	375 - 482	4.5e-20	Ribophorin II second domain
Ribophorin_II_3rd	PF23860	489 - 612	6.8e-38	Ribophorin II third domain
Ribophorin_II_C	PF25147	645 - 745	9.4e-24	Ribophorin_II, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21150 AT4G21150 AT4G21150
fragaria_vesca	FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250
malus_domestica	MD05G1194900.v1.1 MD10G1181500.v1.1
prunus_persica	Prupe.8G221600_v2.0.a1
pyrus_communis	pycom05g18220
rosa_chinensis	RchiOBHm_Chr6g0287811
rosa_laevigata	RLG00000012466
rosa_multiflora	Rmu_sc0003335.1_g000010 Rmu_sc0003877.1_g000006 Rmu_sc0006738.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180780
rosa_rugosa	Rorug06G0191800 Rorug06G0191800
rosa_samantha	Rh6AG301700 Rh6BG307700
rosa_wichuraiana	Rw6G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	980
AccB1I	GGYRCC	1 cut(s)	887
AccB7I	CCANNNNNTGG	2 cut(s)	1321, 2006
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	9 cut(s)	174, 269, 309, 312, 1825, 1867, 2329, 2411, 3200
AclI	AACGTT	1 cut(s)	3171
AcoI	YGGCCR	2 cut(s)	1822, 3017
AcsI	RAATTY	5 cut(s)	1025, 1476, 1700, 2675, 2893
AcuI	CTGAAG	3 cut(s)	1413, 2066, 2162
AcyI	GRCGYC	2 cut(s)	888, 977
AfaI	GTAC	9 cut(s)	651, 748, 1192, 1485, 2306, 2394, 2640, 2841, 3156
AflIII	ACRYGT	1 cut(s)	3058
AhlI	ACTAGT	1 cut(s)	2489
AjiI	CACGTC	1 cut(s)	2061
AjnI	CCWGG	9 cut(s)	330, 997, 1048, 1281, 1320, 2307, 2462, 2499, 2827
AloI	GAACNNNNNNTCC	2 cut(s)	1277, 1309
Alw21I	GWGCWC	3 cut(s)	243, 324, 1213
Alw26I	GTCTC	6 cut(s)	113, 696, 1117, 1649, 2483, 2812
Ama87I	CYCGRG	4 cut(s)	224, 389, 1724, 1753
AoxI	GGCC	8 cut(s)	4, 270, 1425, 1822, 1860, 1907, 2799, 3017
ApaI	GGGCCC	1 cut(s)	1911
ApeKI	GCWGC	5 cut(s)	755, 968, 1576, 2108, 2561
ApoI	RAATTY	5 cut(s)	1025, 1476, 1700, 2675, 2893
ArsI	GACNNNNNNTTYG	4 cut(s)	85, 117, 1588, 1620
AseI	ATTAAT	1 cut(s)	2879
Asp700I	GAANNNNTTC	2 cut(s)	1805, 2051
AspLEI	GCGC	5 cut(s)	419, 720, 890, 1581, 2031
AspS9I	GGNCC	4 cut(s)	4, 1426, 1907, 1908
AsuC2I	CCSGG	1 cut(s)	3108
AsuHPI	GGTGA	7 cut(s)	293, 319, 1869, 2293, 2383, 2473, 3058
AsuII	TTCGAA	1 cut(s)	851
AvaI	CYCGRG	4 cut(s)	224, 389, 1724, 1753
BaeGI	GKGCMC	3 cut(s)	232, 1911, 2211
BaeI	ACNNNNGTAYC	2 cut(s)	2384, 2417
BalI	TGGCCA	1 cut(s)	3019
BamHI	GGATCC	2 cut(s)	335, 2214
BanI	GGYRCC	1 cut(s)	887
BanII	GRGCYC	2 cut(s)	324, 1911
BbsI	GAAGAC	5 cut(s)	271, 1401, 1979, 2381, 2525
Bbv12I	GWGCWC	3 cut(s)	243, 324, 1213
BbvI	GCAGC	5 cut(s)	742, 980, 1563, 2120, 2548
BceAI	ACGGC	2 cut(s)	2514, 2634
BciT130I	CCWGG	9 cut(s)	332, 999, 1050, 1283, 1322, 2309, 2464, 2501, 2829
BciVI	GTATCC	3 cut(s)	1304, 2803, 2950
BclI	TGATCA	3 cut(s)	814, 913, 2968
BcnI	CCSGG	1 cut(s)	3108
BcoDI	GTCTC	6 cut(s)	113, 696, 1117, 1649, 2483, 2812
BcuI	ACTAGT	1 cut(s)	2489
BfaI	CTAG	5 cut(s)	587, 744, 1715, 2490, 2688
BfmI	CTRYAG	3 cut(s)	721, 1143, 3218
BfoI	RGCGCY	3 cut(s)	420, 721, 891
BfuI	GTATCC	3 cut(s)	1304, 2803, 2950
BglII	AGATCT	1 cut(s)	1837
BisI	GCNGC	8 cut(s)	270, 312, 756, 969, 1577, 1825, 2109, 2562
BlsI	GCNGC	8 cut(s)	271, 313, 757, 970, 1578, 1826, 2110, 2563
BmeT110I	CYCGRG	4 cut(s)	224, 389, 1724, 1753
BmgBI	CACGTC	1 cut(s)	2061
BmgT120I	GGNCC	4 cut(s)	4, 1426, 1907, 1908
BmiI	GGNNCC	6 cut(s)	337, 889, 996, 1909, 1941, 2216
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	7 cut(s)	652, 809, 1224, 1252, 1777, 2647, 2862
BmuI	ACTGGG	1 cut(s)	733
BpiI	GAAGAC	5 cut(s)	271, 1401, 1979, 2381, 2525
BpmI	CTGGAG	3 cut(s)	804, 1437, 1554
Bpu10I	CCTNAGC	1 cut(s)	2032
Bpu14I	TTCGAA	1 cut(s)	851
BpuEI	CTTGAG	2 cut(s)	1160, 1274
BpuMI	CCSGG	1 cut(s)	3108
BsaAI	YACGTR	1 cut(s)	413
BsaBI	GATNNNNATC	2 cut(s)	1836, 3019
BsaHI	GRCGYC	2 cut(s)	888, 977
BsaI	GGTCTC	5 cut(s)	113, 1117, 1649, 2483, 2812
BsaWI	WCCGGW	1 cut(s)	1448
Bse118I	RCCGGY	1 cut(s)	1879
Bse1I	ACTGG	2 cut(s)	739, 1420
Bse3DI	GCAATG	3 cut(s)	540, 581, 2103
Bse8I	GATNNNNATC	2 cut(s)	1836, 3019
BseBI	CCWGG	9 cut(s)	332, 999, 1050, 1283, 1322, 2309, 2464, 2501, 2829
BseGI	GGATG	8 cut(s)	10, 532, 800, 850, 1330, 2240, 2479, 2662
BseJI	GATNNNNATC	2 cut(s)	1836, 3019
BseMI	GCAATG	3 cut(s)	540, 581, 2103
BseMII	CTCAG	5 cut(s)	309, 362, 630, 686, 1845
BseNI	ACTGG	2 cut(s)	739, 1420
BseRI	GAGGAG	4 cut(s)	1203, 1206, 2528, 2536
BseSI	GKGCMC	3 cut(s)	232, 1911, 2211
BseXI	GCAGC	5 cut(s)	742, 980, 1563, 2120, 2548
BseYI	CCCAGC	1 cut(s)	2762
BsgI	GTGCAG	2 cut(s)	2945, 3111
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	8 cut(s)	6, 272, 1427, 1824, 1862, 1909, 2801, 3019
BshNI	GGYRCC	1 cut(s)	887
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	3 cut(s)	243, 324, 1213
BsiHKCI	CYCGRG	4 cut(s)	224, 389, 1724, 1753
BsiSI	CCGG	5 cut(s)	1449, 1692, 1880, 2565, 3107
BslFI	GGGAC	1 cut(s)	1103
BsmAI	GTCTC	6 cut(s)	113, 696, 1117, 1649, 2483, 2812
BsmFI	GGGAC	1 cut(s)	1103
BsmI	GAATGC	2 cut(s)	1044, 1474
BsnI	GGCC	8 cut(s)	6, 272, 1427, 1824, 1862, 1909, 2801, 3019
Bso31I	GGTCTC	5 cut(s)	113, 1117, 1649, 2483, 2812
BsoBI	CYCGRG	4 cut(s)	224, 389, 1724, 1753
Bsp119I	TTCGAA	1 cut(s)	851
Bsp120I	GGGCCC	1 cut(s)	1907
Bsp1286I	GDGCHC	6 cut(s)	232, 243, 324, 1213, 1911, 2211
BspACI	CCGC	9 cut(s)	174, 269, 309, 312, 1825, 1867, 2329, 2411, 3200
BspANI	GGCC	8 cut(s)	6, 272, 1427, 1824, 1862, 1909, 2801, 3019
BspCNI	CTCAG	5 cut(s)	310, 363, 631, 687, 1846
BspHI	TCATGA	1 cut(s)	1384
BspLI	GGNNCC	6 cut(s)	337, 889, 996, 1909, 1941, 2216
BspQI	GCTCTTC	2 cut(s)	329, 2282
BspT104I	TTCGAA	1 cut(s)	851
BspT107I	GGYRCC	1 cut(s)	887
BspTNI	GGTCTC	5 cut(s)	113, 1117, 1649, 2483, 2812
BsrDI	GCAATG	3 cut(s)	540, 581, 2103
BsrFI	RCCGGY	1 cut(s)	1879
BsrI	ACTGG	2 cut(s)	739, 1420
BssAI	RCCGGY	1 cut(s)	1879
BssNI	GRCGYC	2 cut(s)	888, 977
BssT1I	CCWWGG	3 cut(s)	1033, 1659, 2652
Bst2UI	CCWGG	9 cut(s)	332, 999, 1050, 1283, 1322, 2309, 2464, 2501, 2829
Bst6I	CTCTTC	3 cut(s)	329, 348, 2282
BstACI	GRCGYC	2 cut(s)	888, 977
BstBAI	YACGTR	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	577, 1239, 1279
BstDEI	CTNAG	7 cut(s)	318, 371, 639, 695, 1854, 2032, 2853
BstENI	CCTNNNNNAGG	1 cut(s)	2651
BstF5I	GGATG	8 cut(s)	10, 532, 800, 850, 1330, 2240, 2479, 2662
BstH2I	RGCGCY	3 cut(s)	420, 721, 891
BstHHI	GCGC	5 cut(s)	419, 720, 890, 1581, 2031
BstMAI	GTCTC	6 cut(s)	113, 696, 1117, 1649, 2483, 2812
BstMCI	CGRYCG	1 cut(s)	255
BstNI	CCWGG	9 cut(s)	332, 999, 1050, 1283, 1322, 2309, 2464, 2501, 2829
BstNSI	RCATGY	2 cut(s)	3062, 3161
BstSFI	CTRYAG	3 cut(s)	721, 1143, 3218
BstSLI	GKGCMC	3 cut(s)	232, 1911, 2211
BstV1I	GCAGC	5 cut(s)	742, 980, 1563, 2120, 2548
BstV2I	GAAGAC	5 cut(s)	271, 1401, 1979, 2381, 2525
BstX2I	RGATCY	5 cut(s)	335, 1837, 2149, 2214, 2684
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	5 cut(s)	335, 1837, 2149, 2214, 2684
BsuI	GTATCC	3 cut(s)	1304, 2803, 2950
BsuRI	GGCC	8 cut(s)	6, 272, 1427, 1824, 1862, 1909, 2801, 3019
BtrI	CACGTC	1 cut(s)	2061
BtsCI	GGATG	8 cut(s)	10, 532, 800, 850, 1330, 2240, 2479, 2662
BtsIMutI	CAGTG	3 cut(s)	179, 871, 1152
Cac8I	GCNNGC	3 cut(s)	577, 1239, 1279
CciI	TCATGA	1 cut(s)	1384
CfoI	GCGC	5 cut(s)	419, 720, 890, 1581, 2031
Cfr10I	RCCGGY	1 cut(s)	1879
Cfr13I	GGNCC	4 cut(s)	4, 1426, 1907, 1908
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	9 cut(s)	650, 747, 1191, 1484, 2305, 2393, 2639, 2840, 3155
CviAII	CATG	9 cut(s)	1316, 1385, 1613, 1652, 2096, 2792, 2814, 3059, 3158
CviQI	GTAC	9 cut(s)	650, 747, 1191, 1484, 2305, 2393, 2639, 2840, 3155
DdeI	CTNAG	7 cut(s)	318, 371, 639, 695, 1854, 2032, 2853
DinI	GGCGCC	1 cut(s)	889
EaeI	YGGCCR	2 cut(s)	1822, 3017
Eam1104I	CTCTTC	3 cut(s)	329, 348, 2282
EarI	CTCTTC	3 cut(s)	329, 348, 2282
EciI	GGCGGA	2 cut(s)	298, 2426
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	3 cut(s)	1033, 1659, 2652
Eco147I	AGGCCT	1 cut(s)	2801
Eco24I	GRGCYC	2 cut(s)	324, 1911
Eco31I	GGTCTC	5 cut(s)	113, 1117, 1649, 2483, 2812
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	3 cut(s)	1413, 2066, 2162
Eco88I	CYCGRG	4 cut(s)	224, 389, 1724, 1753
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	2651
EcoRII	CCWGG	9 cut(s)	330, 997, 1048, 1281, 1320, 2307, 2462, 2499, 2827
EcoT14I	CCWWGG	3 cut(s)	1033, 1659, 2652
EcoT38I	GRGCYC	2 cut(s)	324, 1911
EgeI	GGCGCC	1 cut(s)	889
EheI	GGCGCC	1 cut(s)	889
ErhI	CCWWGG	3 cut(s)	1033, 1659, 2652
FaeI	CATG	9 cut(s)	1319, 1388, 1616, 1655, 2099, 2795, 2817, 3062, 3161
FalI	AAGNNNNNCTT	2 cut(s)	2901, 2933
FaqI	GGGAC	1 cut(s)	1103
FatI	CATG	9 cut(s)	1315, 1384, 1612, 1651, 2095, 2791, 2813, 3058, 3157
FauI	CCCGC	1 cut(s)	1874
FauNDI	CATATG	1 cut(s)	1671
FbaI	TGATCA	3 cut(s)	814, 913, 2968
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	8 cut(s)	270, 312, 756, 969, 1577, 1825, 2109, 2562
FokI	GGATG	7 cut(s)	539, 787, 857, 1337, 2227, 2486, 2669
FriOI	GRGCYC	2 cut(s)	324, 1911
Fsp4HI	GCNGC	8 cut(s)	270, 312, 756, 969, 1577, 1825, 2109, 2562
FspBI	CTAG	5 cut(s)	587, 744, 1715, 2490, 2688
GlaI	GCGC	5 cut(s)	418, 719, 889, 1580, 2030
GluI	GCNGC	8 cut(s)	270, 312, 756, 969, 1577, 1825, 2109, 2562
GsaI	CCCAGC	1 cut(s)	2766
GsuI	CTGGAG	3 cut(s)	804, 1437, 1554
HaeII	RGCGCY	3 cut(s)	420, 721, 891
HaeIII	GGCC	8 cut(s)	6, 272, 1427, 1824, 1862, 1909, 2801, 3019
HapII	CCGG	5 cut(s)	1449, 1692, 1880, 2565, 3107
HgaI	GACGC	1 cut(s)	927
HhaI	GCGC	5 cut(s)	419, 720, 890, 1581, 2031
Hin1I	GRCGYC	2 cut(s)	888, 977
Hin1II	CATG	9 cut(s)	1319, 1388, 1616, 1655, 2099, 2795, 2817, 3062, 3161
Hin6I	GCGC	5 cut(s)	417, 718, 888, 1579, 2029
HinP1I	GCGC	5 cut(s)	417, 718, 888, 1579, 2029
HincII	GTYRAC	3 cut(s)	496, 1735, 1888
HindII	GTYRAC	3 cut(s)	496, 1735, 1888
HindIII	AAGCTT	3 cut(s)	443, 854, 1949
HpaI	GTTAAC	2 cut(s)	496, 1888
HpaII	CCGG	5 cut(s)	1449, 1692, 1880, 2565, 3107
HphI	GGTGA	7 cut(s)	293, 319, 1869, 2293, 2383, 2473, 3058
Hpy166II	GTNNAC	6 cut(s)	169, 496, 1735, 1888, 2639, 2789
Hpy188III	TCNNGA	8 cut(s)	256, 391, 549, 871, 1385, 1943, 2749, 2972
Hpy8I	GTNNAC	6 cut(s)	169, 496, 1735, 1888, 2639, 2789
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4IV	ACGT	5 cut(s)	412, 977, 2060, 3171, 3210
HpyF3I	CTNAG	7 cut(s)	318, 371, 639, 695, 1854, 2032, 2853
HpySE526I	ACGT	5 cut(s)	412, 977, 2060, 3171, 3210
Hsp92I	GRCGYC	2 cut(s)	888, 977
Hsp92II	CATG	9 cut(s)	1319, 1388, 1616, 1655, 2099, 2795, 2817, 3062, 3161
HspAI	GCGC	5 cut(s)	417, 718, 888, 1579, 2029
KasI	GGCGCC	1 cut(s)	887
Ksp22I	TGATCA	3 cut(s)	814, 913, 2968
KspAI	GTTAAC	2 cut(s)	496, 1888
LguI	GCTCTTC	2 cut(s)	329, 2282
LmnI	GCTCC	3 cut(s)	246, 469, 1216
Lsp1109I	GCAGC	5 cut(s)	742, 980, 1563, 2120, 2548
LweI	GCATC	7 cut(s)	652, 809, 1224, 1252, 1777, 2647, 2862
MaeI	CTAG	5 cut(s)	587, 744, 1715, 2490, 2688
MaeII	ACGT	5 cut(s)	412, 977, 2060, 3171, 3210
MaeIII	GTNAC	5 cut(s)	101, 973, 1355, 1444, 1760
MfeI	CAATTG	1 cut(s)	1592
MflI	RGATCY	5 cut(s)	335, 1837, 2149, 2214, 2684
MhlI	GDGCHC	6 cut(s)	232, 243, 324, 1213, 1911, 2211
MlsI	TGGCCA	1 cut(s)	3019
MluNI	TGGCCA	1 cut(s)	3019
Mly113I	GGCGCC	1 cut(s)	888
MlyI	GAGTC	4 cut(s)	164, 290, 928, 1076
MmeI	TCCRAC	6 cut(s)	318, 1163, 1330, 1762, 2127, 2569
Mox20I	TGGCCA	1 cut(s)	3019
MroXI	GAANNNNTTC	2 cut(s)	1805, 2051
MscI	TGGCCA	1 cut(s)	3019
Msp20I	TGGCCA	1 cut(s)	3019
MspA1I	CMGCKG	2 cut(s)	971, 2762
MspI	CCGG	5 cut(s)	1449, 1692, 1880, 2565, 3107
MunI	CAATTG	1 cut(s)	1592
Mva1269I	GAATGC	2 cut(s)	1044, 1474
MvaI	CCWGG	9 cut(s)	332, 999, 1050, 1283, 1322, 2309, 2464, 2501, 2829
NarI	GGCGCC	1 cut(s)	888
NciI	CCSGG	1 cut(s)	3108
NdeI	CATATG	1 cut(s)	1671
NlaIII	CATG	9 cut(s)	1319, 1388, 1616, 1655, 2099, 2795, 2817, 3062, 3161
NlaIV	GGNNCC	6 cut(s)	337, 889, 996, 1909, 1941, 2216
NmuCI	GTSAC	2 cut(s)	101, 973
NspI	RCATGY	2 cut(s)	3062, 3161
NspV	TTCGAA	1 cut(s)	851
PagI	TCATGA	1 cut(s)	1384
PasI	CCCWGGG	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	2801
PciI	ACATGT	1 cut(s)	3058
PciSI	GCTCTTC	2 cut(s)	329, 2282
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	2 cut(s)	1044, 1474
PdmI	GAANNNNTTC	2 cut(s)	1805, 2051
PfeI	GAWTC	6 cut(s)	458, 1388, 2041, 2592, 2995, 3009
PflFI	GACNNNGTC	1 cut(s)	866
PflMI	CCANNNNNTGG	2 cut(s)	1321, 2006
PfoI	TCCNGGA	2 cut(s)	1320, 2499
PkrI	GCNGC	8 cut(s)	271, 313, 757, 970, 1578, 1826, 2110, 2563
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	4 cut(s)	164, 290, 927, 1076
PluTI	GGCGCC	1 cut(s)	891
PpsI	GAGTC	4 cut(s)	164, 290, 927, 1076
Ppu21I	YACGTR	1 cut(s)	413
PscI	ACATGT	1 cut(s)	3058
PshBI	ATTAAT	1 cut(s)	2879
Psp124BI	GAGCTC	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	3171
Psp6I	CCWGG	9 cut(s)	330, 997, 1048, 1281, 1320, 2307, 2462, 2499, 2827
PspFI	CCCAGC	1 cut(s)	2762
PspGI	CCWGG	9 cut(s)	330, 997, 1048, 1281, 1320, 2307, 2462, 2499, 2827
PspN4I	GGNNCC	6 cut(s)	337, 889, 996, 1909, 1941, 2216
PspOMI	GGGCCC	1 cut(s)	1907
PspPI	GGNCC	4 cut(s)	4, 1426, 1907, 1908
PsuI	RGATCY	5 cut(s)	335, 1837, 2149, 2214, 2684
PsyI	GACNNNGTC	1 cut(s)	866
PvuI	CGATCG	1 cut(s)	255
PvuII	CAGCTG	2 cut(s)	971, 2762
RsaI	GTAC	9 cut(s)	651, 748, 1192, 1485, 2306, 2394, 2640, 2841, 3156
RsaNI	GTAC	9 cut(s)	650, 747, 1191, 1484, 2305, 2393, 2639, 2840, 3155
SacI	GAGCTC	1 cut(s)	324
SapI	GCTCTTC	2 cut(s)	329, 2282
SatI	GCNGC	8 cut(s)	270, 312, 756, 969, 1577, 1825, 2109, 2562
Sau96I	GGNCC	4 cut(s)	4, 1426, 1907, 1908
SchI	GAGTC	4 cut(s)	164, 290, 928, 1076
SduI	GDGCHC	6 cut(s)	232, 243, 324, 1213, 1911, 2211
SfaNI	GCATC	7 cut(s)	652, 809, 1224, 1252, 1777, 2647, 2862
SfcI	CTRYAG	3 cut(s)	721, 1143, 3218
SfoI	GGCGCC	1 cut(s)	889
SfuI	TTCGAA	1 cut(s)	851
SmlI	CTYRAG	2 cut(s)	1175, 1289
SmoI	CTYRAG	2 cut(s)	1175, 1289
SpeI	ACTAGT	1 cut(s)	2489
SseBI	AGGCCT	1 cut(s)	2801
SsiI	CCGC	9 cut(s)	174, 269, 309, 312, 1825, 1867, 2329, 2411, 3200
SspDI	GGCGCC	1 cut(s)	887
SspI	AATATT	1 cut(s)	2707
SspMI	CTAG	5 cut(s)	587, 744, 1715, 2490, 2688
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	2801
StyI	CCWWGG	3 cut(s)	1033, 1659, 2652
TaiI	ACGT	5 cut(s)	415, 980, 2063, 3174, 3213
TaqI	TCGA	6 cut(s)	25, 342, 851, 870, 949, 2748
TatI	WGTACW	2 cut(s)	649, 1483
TauI	GCSGC	3 cut(s)	272, 314, 1827
TfiI	GAWTC	6 cut(s)	458, 1388, 2041, 2592, 2995, 3009
TscAI	CASTG	3 cut(s)	186, 871, 1152
TseFI	GTSAC	2 cut(s)	101, 973
TseI	GCWGC	5 cut(s)	755, 968, 1576, 2108, 2561
Tsp45I	GTSAC	2 cut(s)	101, 973
TspDTI	ATGAA	8 cut(s)	378, 783, 918, 1143, 1373, 2625, 3096, 3117
TspGWI	ACGGA	3 cut(s)	265, 1105, 3175
TspRI	CASTG	3 cut(s)	186, 871, 1152
Tth111I	GACNNNGTC	1 cut(s)	866
Van91I	CCANNNNNTGG	2 cut(s)	1321, 2006
VspI	ATTAAT	1 cut(s)	2879
XagI	CCTNNNNNAGG	1 cut(s)	2651
XapI	RAATTY	5 cut(s)	1025, 1476, 1700, 2675, 2893
XceI	RCATGY	2 cut(s)	3062, 3161
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	2 cut(s)	1805, 2051
XspI	CTAG	5 cut(s)	587, 744, 1715, 2490, 2688
ZraI	GACGTC	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.