Rmu_sc0003342.1_g000051
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003342.1
OG0019783
Physical Location & Seq
Reverse (-)
201372 .. 203046
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003342.1_g000051.1.cds

Sequence Viewer

Length: 606 bp
atgttggctcatccctatgccatgtccacctactatagaaaggatctatcccatagtagatcaagtgtcccaaaacaaacaaaaaaattgagaaaccacgagaggcgtcgtttcggcggagacggactcatcggtgctgcttcagctcaaaggctcagtcttggactcggaggggtttctctcgagctggggctcgttcaattccagtcactgctcgtggtctggagtcttgtgcaacaggaattttcatgtcatttcgctcaacattactggcggcggctgagagggaggttggtagggaagttcccttctgtgattgggaagctcactgagctaaaggtgttgtctttgccctttaatggttttgatggtgaaattcctgttgaaatttggggcatggagaacctagaggtcgttgatgttgaaggaaattcgatgaccgggtcttttccgtttcgggtgaacccgaatttgagctttctgaatcttgggtttaataagattcacggattagaaggaagcatagatgaaaagactcgtaagaagatggaaaagatggagaagaaggcttcaagagcccagtttgtcaagacaagatatagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

201

Amino Acids

22.87

Weight (kDa)

10.08

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019783)

Species Orthologous Gene IDs
malus_domestica MD07G1269300.v1.1
rosa_multiflora Rmu_sc0003342.1_g000051
rosa_roxburghii Rroxscaffold_2G00104420 Rroxscaffold_2G00104430
rosa_rugosa Rorug02G0365600
rosa_samantha Rh2BG426700 Rh6BG210700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 117, 274, 277
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 5 cut(s) 242, 375, 387, 430, 469
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 4 cut(s) 200, 386, 425, 573
AluBI AGCT 5 cut(s) 146, 187, 325, 334, 477
AluI AGCT 5 cut(s) 146, 187, 325, 334, 477
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 51
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 5 cut(s) 242, 375, 387, 430, 469
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 383, 472
AvaI CYCGRG 1 cut(s) 182
BanII GRGCYC 2 cut(s) 195, 580
BauI CACGAG 2 cut(s) 98, 215
BbvI GCAGC 1 cut(s) 124
BccI CCATC 3 cut(s) 362, 541, 550
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 3 cut(s) 138, 275, 278
BlsI GCNGC 3 cut(s) 139, 276, 279
Bme1390I CCNGG 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 442
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 205, 275, 580
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 3 cut(s) 169, 272, 321
BseNI ACTGG 3 cut(s) 205, 275, 580
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 195, 580
Bsp143I GATC 2 cut(s) 43, 59
BspACI CCGC 3 cut(s) 117, 274, 277
BspCNI CTCAG 3 cut(s) 168, 273, 322
BspPI GGATC 1 cut(s) 51
BsrI ACTGG 3 cut(s) 205, 275, 580
BssMI GATC 2 cut(s) 43, 59
BssNI GRCGYC 1 cut(s) 106
BssSI CACGAG 2 cut(s) 98, 215
Bst2BI CACGAG 2 cut(s) 98, 215
BstACI GRCGYC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 155, 281, 330
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 46, 62
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 43, 59
BstMWI GCNNNNNNNGC 3 cut(s) 143, 331, 575
BstSCI CCNGG 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 209, 327
CaiI CAGNNNCTG 1 cut(s) 211
CseI GACGC 1 cut(s) 95
CviAII CATG 3 cut(s) 22, 249, 397
DdeI CTNAG 3 cut(s) 155, 281, 330
DpnI GATC 2 cut(s) 45, 61
DpnII GATC 2 cut(s) 43, 59
EciI GGCGGA 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 195, 580
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 182
EcoT38I GRGCYC 2 cut(s) 195, 580
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 3 cut(s) 25, 252, 400
FaiI YATR 8 cut(s) 18, 23, 36, 54, 250, 398, 524, 600
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 21, 248, 396
Fnu4HI GCNGC 3 cut(s) 138, 275, 278
FriOI GRGCYC 2 cut(s) 195, 580
Fsp4HI GCNGC 3 cut(s) 138, 275, 278
FspBI CTAG 1 cut(s) 407
GluI GCNGC 3 cut(s) 138, 275, 278
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 244
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 3 cut(s) 25, 252, 400
HinfI GANTC 6 cut(s) 126, 165, 226, 484, 502, 535
HpaII CCGG 1 cut(s) 441
HphI GGTGA 2 cut(s) 383, 472
Hpy166II GTNNAC 2 cut(s) 27, 463
Hpy188I TCNGA 2 cut(s) 170, 483
Hpy188III TCNNGA 4 cut(s) 182, 223, 573, 589
Hpy8I GTNNAC 2 cut(s) 27, 463
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 4 cut(s) 318, 419, 509, 559
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 331, 575
HpyF3I CTNAG 3 cut(s) 155, 281, 330
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 3 cut(s) 25, 252, 400
Kzo9I GATC 2 cut(s) 43, 59
LpnPI CCDG 8 cut(s) 173, 208, 218, 224, 256, 393, 454, 593
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 45, 61
MboI GATC 2 cut(s) 43, 59
MboII GAAGA 2 cut(s) 556, 574
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 195, 580
MluCI AATT 7 cut(s) 86, 200, 242, 375, 387, 430, 469
MlyI GAGTC 4 cut(s) 120, 159, 235, 529
MnlI CCTC 5 cut(s) 96, 164, 278, 282, 403
MseI TTAA 2 cut(s) 357, 495
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 143, 331, 575
NciI CCSGG 1 cut(s) 442
NdeII GATC 2 cut(s) 43, 59
NlaIII CATG 3 cut(s) 25, 252, 400
NmuCI GTSAC 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 182
PfeI GAWTC 2 cut(s) 484, 502
PflFI GACNNNGTC 1 cut(s) 442
PkrI GCNGC 3 cut(s) 139, 276, 279
PleI GAGTC 4 cut(s) 120, 159, 234, 529
PpsI GAGTC 4 cut(s) 120, 159, 234, 529
PspFI CCCAGC 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 357, 495
SatI GCNGC 3 cut(s) 138, 275, 278
Sau3AI GATC 2 cut(s) 43, 59
SchI GAGTC 4 cut(s) 120, 159, 235, 529
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 2 cut(s) 195, 580
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 7 cut(s) 86, 200, 242, 375, 387, 430, 469
SsiI CCGC 3 cut(s) 117, 274, 277
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 440
TaqI TCGA 2 cut(s) 183, 434
TasI AATT 7 cut(s) 86, 200, 242, 375, 387, 430, 469
TauI GCSGC 2 cut(s) 277, 280
TfiI GAWTC 2 cut(s) 484, 502
Tru1I TTAA 2 cut(s) 357, 495
Tru9I TTAA 2 cut(s) 357, 495
TscAI CASTG 2 cut(s) 216, 334
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 237, 543
TspGWI ACGGA 3 cut(s) 138, 441, 522
TspRI CASTG 2 cut(s) 216, 334
Tth111I GACNNNGTC 1 cut(s) 442
XapI RAATTY 5 cut(s) 242, 375, 387, 430, 469
XhoI CTCGAG 1 cut(s) 182
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.