Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019783

Physical Location & Seq

Genomic Coordinates Forward (+)

27527917 .. 27528303

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTGCGTGCTCATTACTTCCTTGCACTCCTCGCCGTCCTCTTTTCTCTCCTTGTGGCAGGAACAGAGCAAAATGGTGCCACTTTTCTGATTGGTCCTGGTAATGGATGGAAGCCTGTAGAGGACATCAGCGCCCCTCTTATTATAGATATTGCAAAGTTTGCAGTTTCCAAGTACGACCTTAGTAACAAGAAGGACTTGGTCTTTCAGAATGTTACTAAAGGCGCCTACAAGGAGGTCCTAACAGGAACCCAGTATCGGCTCGTCGTTATTCTTAGAGATAATCACTCAACTCGCAACCAGAGCCCAGTTTATGTGGCTAATGTCGTCCATACGCGTCGGAGTCCGGTTAACAAATTGCTCTCTTTTGAACAAATTTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

128

Amino Acids

14.25

Weight (kDa)

9.64

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	41 - 125	2.6e-14	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019783)

Species	Orthologous Gene IDs
malus_domestica	MD07G1269300.v1.1
rosa_multiflora	Rmu_sc0003342.1_g000051
rosa_roxburghii	Rroxscaffold_2G00104420 Rroxscaffold_2G00104430
rosa_rugosa	Rorug02G0365600
rosa_samantha	Rh2BG426700 Rh6BG210700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	77, 224
AccII	CGCG	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	104, 258
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	371, 381
AjnI	CCWGG	1 cut(s)	97
Alw21I	GWGCWC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	134, 227
AspS9I	GGNCC	2 cut(s)	95, 238
AvaII	GGWCC	2 cut(s)	95, 238
BanI	GGYRCC	2 cut(s)	77, 224
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	2 cut(s)	135, 228
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	95, 238
BmgT120I	GGNCC	2 cut(s)	95, 238
BmiI	GGNNCC	3 cut(s)	79, 226, 250
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	2 cut(s)	247, 302
BmuI	ACTGGG	2 cut(s)	247, 302
BsaHI	GRCGYC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 258
Bse1I	ACTGG	2 cut(s)	253, 308
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	104, 258
BseNI	ACTGG	2 cut(s)	253, 308
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	337
BshNI	GGYRCC	2 cut(s)	77, 224
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	104, 258
Bsp1286I	GDGCHC	2 cut(s)	13, 308
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	79, 226, 250
BspT107I	GGYRCC	2 cut(s)	77, 224
BsrI	ACTGG	2 cut(s)	253, 308
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	182, 275
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	2 cut(s)	135, 228
BstHHI	GCGC	2 cut(s)	134, 227
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 161, 303
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	2 cut(s)	134, 227
Cfr13I	GGNCC	2 cut(s)	95, 238
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	4 cut(s)	115, 262, 306, 320
CviKI_1	RGCY	4 cut(s)	115, 262, 306, 320
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	182, 275
DinI	GGCGCC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	95, 238
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	308
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaiI	YATR	3 cut(s)	146, 315, 333
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	308
GlaI	GCGC	2 cut(s)	133, 226
HaeII	RGCGCY	2 cut(s)	135, 228
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	134, 227
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	2 cut(s)	132, 225
HinP1I	GCGC	2 cut(s)	132, 225
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	343
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	90, 210, 342
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	269, 342
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	26, 155, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 161, 303
HpyF3I	CTNAG	2 cut(s)	182, 275
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	2 cut(s)	132, 225
KasI	GGCGCC	1 cut(s)	224
KspAI	GTTAAC	1 cut(s)	352
LpnPI	CCDG	9 cut(s)	45, 84, 111, 129, 231, 266, 314, 321, 360
MaeIII	GTNAC	2 cut(s)	185, 214
MhlI	GDGCHC	2 cut(s)	13, 308
MluCI	AATT	2 cut(s)	356, 375
MluI	ACGCGT	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	5 cut(s)	41, 50, 115, 147, 229
MseI	TTAA	1 cut(s)	351
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	32, 161, 303
NarI	GGCGCC	1 cut(s)	225
NlaIV	GGNNCC	3 cut(s)	79, 226, 250
PflFI	GACNNNGTC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	351
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	351
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	79, 226, 250
PspPI	GGNCC	2 cut(s)	95, 238
PspPPI	RGGWCCY	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	351
Sau96I	GGNCC	2 cut(s)	95, 238
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	13, 308
SetI	ASST	2 cut(s)	183, 240
SfcI	CTRYAG	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	95, 238
Sse9I	AATT	2 cut(s)	356, 375
SspDI	GGCGCC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	97
TasI	AATT	2 cut(s)	356, 375
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	95, 238
XapI	RAATTY	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.