Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019783

Physical Location & Seq

Genomic Coordinates Forward (+)

27524192 .. 27524917

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGGTTTGTCTAAATGCACTAGTCACGCAAAATGGTGCCACTTTTCTGATTGGTCCTGGTAATGGATGGAAGCCTGTAGAGGACAGCAGCGCCCCTCTTATTATAGATATTGCAAAGTTTGCAGTTTCCAAGTACGACCTTAGTAACAAGAAGGACTTGGTCTTTCAGAATGTTACTAAAGGCGCCTACAAGGAGGTCCTAACAGGAACCCAGTATCGGCTCGTCGTTATTGTTAGAGATAATCACTCAACTCGCAACCAGGGCCCAGTTTATGTGGCTAATGTCGTCCATACACGTCGGAGTCCGGTTAACAAATTGCTCTCTTTTGAACAAATTTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

115

Amino Acids

12.66

Weight (kDa)

9.56

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	28 - 112	3.4e-14	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019783)

Species	Orthologous Gene IDs
malus_domestica	MD07G1269300.v1.1
rosa_multiflora	Rmu_sc0003342.1_g000051
rosa_roxburghii	Rroxscaffold_2G00104420 Rroxscaffold_2G00104430
rosa_rugosa	Rorug02G0365600
rosa_samantha	Rh2BG426700 Rh6BG210700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 185
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	65, 219
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	332, 342
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	58, 261
AoxI	GGCC	1 cut(s)	265
ApaI	GGGCCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	95, 188
AspS9I	GGNCC	4 cut(s)	56, 199, 265, 266
AvaII	GGWCC	2 cut(s)	56, 199
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	2 cut(s)	38, 185
BanII	GRGCYC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	60, 263
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	2 cut(s)	96, 189
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	60, 263
Bme18I	GGWCC	2 cut(s)	56, 199
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	4 cut(s)	56, 199, 265, 266
BmiI	GGNNCC	4 cut(s)	40, 187, 211, 267
BmrFI	CCNGG	2 cut(s)	60, 263
BmrI	ACTGGG	2 cut(s)	208, 263
BmuI	ACTGGG	2 cut(s)	208, 263
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 219
Bse1I	ACTGG	2 cut(s)	214, 269
BseBI	CCWGG	2 cut(s)	60, 263
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	65, 219
BseNI	ACTGG	2 cut(s)	214, 269
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	2 cut(s)	38, 185
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	65, 219
BsnI	GGCC	1 cut(s)	267
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	269
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	40, 187, 211, 267
BspT107I	GGYRCC	2 cut(s)	38, 185
BsrI	ACTGG	2 cut(s)	214, 269
BssECI	CCNNGG	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	60, 263
BstACI	GRCGYC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	2 cut(s)	96, 189
BstHHI	GCGC	2 cut(s)	95, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 264
BstNI	CCWGG	2 cut(s)	60, 263
BstSCI	CCNGG	2 cut(s)	58, 261
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	95, 188
Cfr13I	GGNCC	4 cut(s)	56, 199, 265, 266
Csp6I	GTAC	1 cut(s)	136
CviJI	RGCY	4 cut(s)	76, 223, 267, 281
CviKI_1	RGCY	4 cut(s)	76, 223, 267, 281
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	143
DinI	GGCGCC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	56, 199
EcoO109I	RGGNCCY	2 cut(s)	199, 265
EcoRII	CCWGG	2 cut(s)	58, 261
EcoT38I	GRGCYC	1 cut(s)	269
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
FaiI	YATR	3 cut(s)	107, 276, 294
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	94, 187
GluI	GCNGC	1 cut(s)	91
HaeII	RGCGCY	2 cut(s)	96, 189
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	2 cut(s)	95, 188
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	2 cut(s)	93, 186
HinP1I	GCGC	2 cut(s)	93, 186
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	51, 171, 303
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	230, 303
HpyAV	CCTTC	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	20, 116, 125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 264
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	298
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	2 cut(s)	93, 186
KasI	GGCGCC	1 cut(s)	185
KspAI	GTTAAC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	45, 72, 90, 192, 227, 248, 275, 282, 321
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	3 cut(s)	25, 146, 175
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	317, 336
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	3 cut(s)	76, 108, 190
MseI	TTAA	1 cut(s)	312
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	60, 263
MvaI	CCWGG	2 cut(s)	60, 263
MwoI	GCNNNNNNNGC	2 cut(s)	122, 264
NarI	GGCGCC	1 cut(s)	186
NlaIV	GGNNCC	4 cut(s)	40, 187, 211, 267
NmuCI	GTSAC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	312
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	58, 261
PspGI	CCWGG	2 cut(s)	58, 261
PspN4I	GGNNCC	4 cut(s)	40, 187, 211, 267
PspOMI	GGGCCC	1 cut(s)	265
PspPI	GGNCC	4 cut(s)	56, 199, 265, 266
PspPPI	RGGWCCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	91
Sau96I	GGNCC	4 cut(s)	56, 199, 265, 266
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	60, 263
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	3 cut(s)	144, 201, 301
SfcI	CTRYAG	1 cut(s)	78
SfoI	GGCGCC	1 cut(s)	187
SinI	GGWCC	2 cut(s)	56, 199
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	2 cut(s)	317, 336
SsiI	CCGC	1 cut(s)	5
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	58, 261
TaiI	ACGT	1 cut(s)	301
TasI	AATT	2 cut(s)	317, 336
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	56, 199
XapI	RAATTY	1 cut(s)	336
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.