Rh2BG426700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019783
Physical Location & Seq
Reverse (-)
60134167 .. 60149405
15239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG426700.1

Sequence Viewer

Length: 753 bp
ATGTTGCGTGCTCACTACTTCCGTGCACCACTCGCCGTCCTCTTTCCTCTCCTCGTGGCAGGAACAGAGCAAAACGGCGCCACTTTTCTAACTGGTCCTGGCAAGGTTGTTCGTTGCTCTTCCAATCTAGATCGGCGACTACTGCGTCCAATTGAAAGCATGGTTGTTCGTTGCTCTTCCAATTCAGATCGGCGACTATTGGGTCCGATTGGAAATGGAAGCTCTGGAGATCCTGAATGCTGCATTGTAGTTATTGTTTGGGTTCTTATAGAACTATTTGTTTTGATGAATCCTCCTCTTGGAGAAATGTTGATTGGAGCTGATCAACCTTGGTTGGATTTTGTTGTTGCTGCTTGCAATGGTCTTCAGCAGTATAGAAATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGTCCTTGAACAGAAGTTGGTTGGTCTTGGCACGGAAGAGGGATTGGGAATTAGGAAGAGTTGTGTGGGTGGTAGAGGGAGGTTGGTAGGGAAGTTCCCTTCTGTGATTGGGAAGCTCACTGAGCTAAAGGTGTTGTCTTTGCCCTTTAATGGTTTTGATGGTGAAATTCCTGTTGAAATTTGGGGCATGGAGAACCTAGAGGTCGTTGATGTTGAAGGAAATTCGATGACCGGGTCTTTTCCGTTTCGGGTGAACCCGAATTTGAGCTTTCTGAATCTTGGGTTTAATAAGATTCACGGTGAGATGCCGATCTTCAGCTCTATGAGCTTTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

250

Amino Acids

27.32

Weight (kDa)

6.18

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019783)

Species Orthologous Gene IDs
malus_domestica MD07G1269300.v1.1
rosa_multiflora Rmu_sc0003342.1_g000051
rosa_roxburghii Rroxscaffold_2G00104420 Rroxscaffold_2G00104430
rosa_rugosa Rorug02G0365600
rosa_samantha Rh2BG426700 Rh6BG210700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 144, 201
AccB1I GGYRCC 1 cut(s) 77
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 4 cut(s) 579, 591, 634, 673
AcuI CTGAAG 2 cut(s) 350, 712
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 299, 563
AgsI TTSAA 5 cut(s) 155, 397, 422, 590, 629
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 7 cut(s) 222, 320, 529, 538, 681, 732, 741
AluI AGCT 7 cut(s) 222, 320, 529, 538, 681, 732, 741
Alw21I GWGCWC 2 cut(s) 13, 28
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 240, 350
ApoI RAATTY 4 cut(s) 579, 591, 634, 673
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 95, 203
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 3 cut(s) 587, 676, 725
AvaII GGWCC 2 cut(s) 95, 203
BaeGI GKGCMC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 13, 28
BbvI GCAGC 2 cut(s) 227, 337
BccI CCATC 1 cut(s) 566
BceAI ACGGC 2 cut(s) 20, 91
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 646
BfaI CTAG 2 cut(s) 128, 611
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 2 cut(s) 241, 351
BlsI GCNGC 2 cut(s) 242, 352
Bme1390I CCNGG 2 cut(s) 99, 646
Bme18I GGWCC 2 cut(s) 95, 203
BmgT120I GGNCC 2 cut(s) 95, 203
BmiI GGNNCC 2 cut(s) 79, 204
BmrFI CCNGG 2 cut(s) 99, 646
BmsI GCATC 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 563
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 722
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 329
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 2 cut(s) 299, 563
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 41, 285
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 2 cut(s) 227, 337
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 13, 28
BsiSI CCGG 1 cut(s) 645
BslI CCNNNNNNNGG 2 cut(s) 299, 563
BsmI GAATGC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 13, 28
Bsp143I GATC 5 cut(s) 130, 187, 229, 322, 723
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 79, 204
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 2 cut(s) 124, 181
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 364
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 5 cut(s) 130, 187, 229, 322, 723
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 713
Bst6I CTCTTC 4 cut(s) 124, 181, 444, 464
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 9, 355
BstDEI CTNAG 1 cut(s) 534
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 5 cut(s) 133, 190, 232, 325, 726
BstMBI GATC 5 cut(s) 130, 187, 229, 322, 723
BstMWI GCNNNNNNNGC 4 cut(s) 32, 142, 535, 738
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 97, 644
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 227, 337
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 9, 355
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 95, 203
CseI GACGC 1 cut(s) 134
CviAII CATG 2 cut(s) 160, 601
CviJI RGCY 7 cut(s) 222, 320, 529, 538, 681, 732, 741
CviKI_1 RGCY 7 cut(s) 222, 320, 529, 538, 681, 732, 741
DdeI CTNAG 1 cut(s) 534
DinI GGCGCC 1 cut(s) 79
DpnI GATC 5 cut(s) 132, 189, 231, 324, 725
DpnII GATC 5 cut(s) 130, 187, 229, 322, 723
DrdI GACNNNNNNGTC 2 cut(s) 144, 201
DseDI GACNNNNNNGTC 2 cut(s) 144, 201
Eam1104I CTCTTC 4 cut(s) 124, 181, 444, 464
EarI CTCTTC 4 cut(s) 124, 181, 444, 464
Eco130I CCWWGG 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 95, 203
Eco57I CTGAAG 2 cut(s) 350, 712
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 329
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 2 cut(s) 163, 604
FaiI YATR 6 cut(s) 161, 269, 375, 404, 602, 737
FatI CATG 2 cut(s) 159, 600
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 241, 351
Fsp4HI GCNGC 2 cut(s) 241, 351
FspBI CTAG 2 cut(s) 128, 611
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 241, 351
GsuI CTGGAG 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 81
HapII CCGG 1 cut(s) 645
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 163, 604
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 289, 688, 706
HpaII CCGG 1 cut(s) 645
HphI GGTGA 3 cut(s) 587, 676, 725
Hpy166II GTNNAC 2 cut(s) 26, 667
Hpy188I TCNGA 3 cut(s) 187, 207, 687
Hpy188III TCNNGA 3 cut(s) 128, 225, 233
Hpy8I GTNNAC 2 cut(s) 26, 667
HpyAV CCTTC 2 cut(s) 522, 623
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4V TGCA 3 cut(s) 26, 243, 357
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 142, 535, 738
HpyF3I CTNAG 1 cut(s) 534
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 163, 604
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 5 cut(s) 130, 187, 229, 322, 723
LguI GCTCTTC 2 cut(s) 124, 181
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 8 cut(s) 45, 78, 84, 111, 210, 246, 597, 658
Lsp1109I GCAGC 2 cut(s) 227, 337
LweI GCATC 1 cut(s) 708
MaeI CTAG 2 cut(s) 128, 611
MalI GATC 5 cut(s) 132, 189, 231, 324, 725
MboI GATC 5 cut(s) 130, 187, 229, 322, 723
MboII GAAGA 6 cut(s) 111, 168, 356, 461, 481, 718
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 13, 28
MluCI AATT 7 cut(s) 150, 181, 462, 579, 591, 634, 673
Mly113I GGCGCC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 315
MseI TTAA 3 cut(s) 387, 561, 699
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 2 cut(s) 99, 646
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 32, 142, 535, 738
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 1 cut(s) 646
NdeII GATC 5 cut(s) 130, 187, 229, 322, 723
NlaIII CATG 2 cut(s) 163, 604
NlaIV GGNNCC 2 cut(s) 79, 204
PciSI GCTCTTC 2 cut(s) 124, 181
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 289, 688, 706
PflFI GACNNNGTC 1 cut(s) 646
PkrI GCNGC 2 cut(s) 242, 352
PluTI GGCGCC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 79, 204
PspPI GGNCC 2 cut(s) 95, 203
PsuI RGATCY 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 646
SapI GCTCTTC 2 cut(s) 124, 181
SaqAI TTAA 3 cut(s) 387, 561, 699
SatI GCNGC 2 cut(s) 241, 351
Sau3AI GATC 5 cut(s) 130, 187, 229, 322, 723
Sau96I GGNCC 2 cut(s) 95, 203
ScrFI CCNGG 2 cut(s) 99, 646
SduI GDGCHC 2 cut(s) 13, 28
SfaNI GCATC 1 cut(s) 708
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 2 cut(s) 95, 203
Sse9I AATT 7 cut(s) 150, 181, 462, 579, 591, 634, 673
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 2 cut(s) 128, 611
StyD4I CCNGG 2 cut(s) 97, 644
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 713
TaqI TCGA 1 cut(s) 638
TasI AATT 7 cut(s) 150, 181, 462, 579, 591, 634, 673
TfiI GAWTC 3 cut(s) 289, 688, 706
Tru1I TTAA 3 cut(s) 387, 561, 699
Tru9I TTAA 3 cut(s) 387, 561, 699
TscAI CASTG 1 cut(s) 538
TseI GCWGC 2 cut(s) 240, 350
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 3 cut(s) 11, 461, 645
TspRI CASTG 1 cut(s) 538
Tth111I GACNNNGTC 1 cut(s) 646
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 2 cut(s) 95, 203
XapI RAATTY 4 cut(s) 579, 591, 634, 673
XbaI TCTAGA 1 cut(s) 127
XspI CTAG 2 cut(s) 128, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.