Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

46390461 .. 46395303

Gene Structure 4843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0365600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAACCGACTTAGAGGCTCAGGGAAGCTATTTTCCCAGTCGCTGCCCCAATTAAGGACTAATATGAGGCATAGAGCTCTGAGATCATGGACTGCTGTTCAGGACACTTTTTTTTCAACCAAGGATGTGTTTGAAAGTCATAAGGTGGTGTTCACAGTTGGAACTTCTATAGCTTCAGTTGCCACAGCATGGATTGTTCCAACTTCAATGGGGAAACAAGAGGCATCCGTAAGTGTTGAATTTATCATGAAGATCCAAGTAAAGCTGTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

91

Amino Acids

10.3

Weight (kDa)

11.0

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	189
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	54, 189
AgsI	TTSAA	4 cut(s)	117, 134, 207, 239
AluBI	AGCT	4 cut(s)	28, 77, 173, 265
AluI	AGCT	4 cut(s)	28, 77, 173, 265
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 189
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	130, 224
BseLI	CCNNNNNNNGG	2 cut(s)	54, 189
BseMII	CTCAG	2 cut(s)	33, 71
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	54, 189
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	83, 252
BspCNI	CTCAG	2 cut(s)	32, 72
BspHI	TCATGA	1 cut(s)	246
BspPI	GGATC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	83, 252
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	11, 19, 80
BstF5I	GGATG	2 cut(s)	130, 224
BstKTI	GATC	2 cut(s)	86, 255
BstMBI	GATC	2 cut(s)	83, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	130, 224
CaiI	CAGNNNCTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	246
CviAII	CATG	3 cut(s)	87, 189, 247
CviJI	RGCY	5 cut(s)	18, 28, 77, 173, 265
CviKI_1	RGCY	5 cut(s)	18, 28, 77, 173, 265
DdeI	CTNAG	3 cut(s)	11, 19, 80
DpnI	GATC	2 cut(s)	85, 254
DpnII	GATC	2 cut(s)	83, 252
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	90, 192, 250
FaiI	YATR	7 cut(s)	65, 72, 88, 141, 170, 190, 248
FalI	AAGNNNNNCTT	1 cut(s)	254
FatI	CATG	3 cut(s)	86, 188, 246
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	2 cut(s)	137, 211
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	90, 192, 250
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	2 cut(s)	101, 247
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	11, 19, 80
Hsp92II	CATG	3 cut(s)	90, 192, 250
Kzo9I	GATC	2 cut(s)	83, 252
LpnPI	CCDG	3 cut(s)	6, 50, 86
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	233
MalI	GATC	2 cut(s)	85, 254
MboI	GATC	2 cut(s)	83, 252
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	50, 239
MmeI	TCCRAC	2 cut(s)	139, 224
MnlI	CCTC	3 cut(s)	8, 60, 214
MseI	TTAA	2 cut(s)	53, 274
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	83, 252
NlaIII	CATG	3 cut(s)	90, 192, 250
PagI	TCATGA	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	53, 274
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	83, 252
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	5 cut(s)	30, 79, 147, 175, 267
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	168
SgeI	CNNG	9 cut(s)	33, 49, 99, 113, 133, 201, 230, 259, 269
Sse9I	AATT	2 cut(s)	50, 239
SstI	GAGCTC	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	157
TasI	AATT	2 cut(s)	50, 239
Tru1I	TTAA	2 cut(s)	53, 274
Tru9I	TTAA	2 cut(s)	53, 274
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	17, 263
TspGWI	ACGGA	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.