Rh2AG068900

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003411
Physical Location & Seq
Reverse (-)
5702742 .. 5703250
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG068900.1

Sequence Viewer

Length: 387 bp
ATGGACTCCATGGAATCGTCTTCGTCTTCATTTTCATCAGATTTGGTCGAGGATGTATCTTCTTCTTCTTCTTCATCTTCAAATGGACCTCTTTATGAATTATCTGAGCTCATGATTCATCTTCCTATAAGGAGAGGTTTATCGAAGTATTATCAAGGAAAGTCGCAATCTTTCACATCTCTGGGAGGTGTGAAGAGCTTAGAGGATCTTGCAAAGAAGGTGGCAGCACCCTATAGAAGGAAAATGAAGCCATGCAAGAGCTATGGAGGTGGTTTAGATCATGGTCACAAATCTTTTAGTACAAGTCCGAAAGCCATTATCTCAAAGAAAGCTATTTCAAAGGGTTCTTTCTTATATTCCAGAAGTAGTAATACCAAGAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.9

Weight (kDa)

9.88

Isoelectric Point (pI)

64.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 213
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 2 cut(s) 81, 339
AluBI AGCT 4 cut(s) 109, 198, 261, 332
AluI AGCT 4 cut(s) 109, 198, 261, 332
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 355, 387
BbsI GAAGAC 2 cut(s) 12, 18
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 232
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 12, 18
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 205, 277
Bsp19I CCATGG 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 97
BspHI TCATGA 1 cut(s) 111
BspPI GGATC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 205, 277
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 105, 199
BstDSI CCRYGG 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 208, 280
BstMBI GATC 2 cut(s) 205, 277
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 2 cut(s) 12, 18
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 4 cut(s) 10, 112, 252, 281
CviJI RGCY 6 cut(s) 109, 198, 250, 261, 314, 332
CviKI_1 RGCY 6 cut(s) 109, 198, 250, 261, 314, 332
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 105, 199
DpnI GATC 2 cut(s) 207, 279
DpnII GATC 2 cut(s) 205, 277
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 13, 115, 255, 284
FaiI YATR 9 cut(s) 11, 96, 113, 128, 234, 253, 264, 282, 355
FatI CATG 4 cut(s) 9, 111, 251, 280
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 13, 115, 255, 284
HinfI GANTC 3 cut(s) 5, 14, 115
Hpy188I TCNGA 3 cut(s) 40, 106, 309
Hpy188III TCNNGA 2 cut(s) 112, 360
HpyAV CCTTC 2 cut(s) 211, 231
HpyCH4V TGCA 2 cut(s) 212, 255
HpyF3I CTNAG 2 cut(s) 105, 199
Hsp92II CATG 4 cut(s) 13, 115, 255, 284
Kzo9I GATC 2 cut(s) 205, 277
LguI GCTCTTC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 167, 373
Lsp1109I GCAGC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 207, 279
MboI GATC 2 cut(s) 205, 277
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 98
MnlI CCTC 7 cut(s) 43, 99, 128, 179, 196, 260, 372
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 205, 277
NlaIII CATG 4 cut(s) 13, 115, 255, 284
NmuCI GTSAC 1 cut(s) 284
PagI TCATGA 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 14, 115
PkrI GCNGC 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 205, 277
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 111
SetI ASST 9 cut(s) 91, 111, 139, 190, 200, 222, 263, 271, 334
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 86
Sse9I AATT 1 cut(s) 98
SstI GAGCTC 1 cut(s) 111
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 48, 143
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 2 cut(s) 14, 115
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 6 cut(s) 18, 24, 63, 107, 111, 260
VpaK11BI GGWCC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.