RNA binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56550 |
| fragaria_vesca | FvH4_1g06410 FvH4_6g32530 |
| malus_domestica | MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1 |
| prunus_persica | Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1 |
| pyrus_communis | pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120 |
| rosa_chinensis | RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911 |
| rosa_laevigata | RLG00000016279 RLG00000019901 |
| rosa_multiflora | Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00104390 Rroxscaffold_2G00149430 |
| rosa_rugosa | Rorug02G0023200 Rorug02G0365600 |
| rosa_samantha | Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500 |
| rosa_wichuraiana | Rw2G006340 Rw2G034120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 89 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AfaI | GTAC | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 381 |
| AgsI | TTSAA | 5 cut(s) | 11, 74, 123, 225, 483 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 38, 39, 71 |
| AluBI | AGCT | 5 cut(s) | 17, 253, 342, 405, 476 |
| AluI | AGCT | 5 cut(s) | 17, 253, 342, 405, 476 |
| Alw21I | GWGCWC | 1 cut(s) | 255 |
| AlwI | GGATC | 1 cut(s) | 357 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 1 cut(s) | 41 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BanII | GRGCYC | 1 cut(s) | 255 |
| BbsI | GAAGAC | 3 cut(s) | 102, 141, 147 |
| Bbv12I | GWGCWC | 1 cut(s) | 255 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfmI | CTRYAG | 1 cut(s) | 376 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmrI | ACTGGG | 1 cut(s) | 91 |
| BmsI | GCATC | 2 cut(s) | 172, 194 |
| BmuI | ACTGGG | 1 cut(s) | 91 |
| BpiI | GAAGAC | 3 cut(s) | 102, 141, 147 |
| Bpu10I | CCTNAGC | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 2 cut(s) | 129, 138 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 381 |
| Bse1I | ACTGG | 1 cut(s) | 86 |
| BseDI | CCNNGG | 2 cut(s) | 129, 138 |
| BseGI | GGATG | 1 cut(s) | 187 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 381 |
| BseMII | CTCAG | 1 cut(s) | 240 |
| BseNI | ACTGG | 1 cut(s) | 86 |
| BsiHKAI | GWGCWC | 1 cut(s) | 255 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 381 |
| Bsp1286I | GDGCHC | 1 cut(s) | 255 |
| Bsp143I | GATC | 3 cut(s) | 31, 349, 421 |
| Bsp19I | CCATGG | 2 cut(s) | 129, 138 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspHI | TCATGA | 1 cut(s) | 255 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BspQI | GCTCTTC | 1 cut(s) | 332 |
| BsrI | ACTGG | 1 cut(s) | 86 |
| BssECI | CCNNGG | 2 cut(s) | 129, 138 |
| BssMI | GATC | 3 cut(s) | 31, 349, 421 |
| BssT1I | CCWWGG | 2 cut(s) | 129, 138 |
| Bst6I | CTCTTC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 3 cut(s) | 18, 249, 343 |
| BstDSI | CCRYGG | 2 cut(s) | 129, 138 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 379 |
| BstF5I | GGATG | 1 cut(s) | 187 |
| BstKTI | GATC | 3 cut(s) | 34, 352, 424 |
| BstMBI | GATC | 3 cut(s) | 31, 349, 421 |
| BstSFI | CTRYAG | 1 cut(s) | 376 |
| BstV2I | GAAGAC | 3 cut(s) | 102, 141, 147 |
| BstX2I | RGATCY | 1 cut(s) | 349 |
| BstYI | RGATCY | 1 cut(s) | 349 |
| BtgI | CCRYGG | 2 cut(s) | 129, 138 |
| BtsCI | GGATG | 1 cut(s) | 187 |
| CciI | TCATGA | 1 cut(s) | 255 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| Csp6I | GTAC | 1 cut(s) | 444 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 345, 380 |
| CviAII | CATG | 5 cut(s) | 130, 139, 256, 396, 425 |
| CviJI | RGCY | 7 cut(s) | 17, 253, 342, 394, 405, 458, 476 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 253, 342, 394, 405, 458, 476 |
| CviQI | GTAC | 1 cut(s) | 444 |
| DdeI | CTNAG | 3 cut(s) | 18, 249, 343 |
| DpnI | GATC | 3 cut(s) | 33, 351, 423 |
| DpnII | GATC | 3 cut(s) | 31, 349, 421 |
| Eam1104I | CTCTTC | 1 cut(s) | 332 |
| EarI | CTCTTC | 1 cut(s) | 332 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 2 cut(s) | 129, 138 |
| Eco24I | GRGCYC | 1 cut(s) | 255 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 2 cut(s) | 129, 138 |
| EcoT22I | ATGCAT | 1 cut(s) | 187 |
| EcoT38I | GRGCYC | 1 cut(s) | 255 |
| ErhI | CCWWGG | 2 cut(s) | 129, 138 |
| FaeI | CATG | 5 cut(s) | 133, 142, 259, 399, 428 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 475, 507 |
| FatI | CATG | 5 cut(s) | 129, 138, 255, 395, 424 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| FokI | GGATG | 1 cut(s) | 194 |
| FriOI | GRGCYC | 1 cut(s) | 255 |
| Hin1II | CATG | 5 cut(s) | 133, 142, 259, 399, 428 |
| HinfI | GANTC | 4 cut(s) | 119, 134, 143, 259 |
| HphI | GGTGA | 1 cut(s) | 41 |
| Hpy188I | TCNGA | 3 cut(s) | 169, 250, 453 |
| Hpy188III | TCNNGA | 5 cut(s) | 11, 107, 123, 256, 520 |
| HpyAV | CCTTC | 2 cut(s) | 355, 375 |
| HpyCH4V | TGCA | 3 cut(s) | 185, 356, 399 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 249, 343 |
| Hsp92II | CATG | 5 cut(s) | 133, 142, 259, 399, 428 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 3 cut(s) | 31, 349, 421 |
| LguI | GCTCTTC | 1 cut(s) | 332 |
| LpnPI | CCDG | 3 cut(s) | 50, 67, 311 |
| LweI | GCATC | 2 cut(s) | 172, 194 |
| MaeIII | GTNAC | 1 cut(s) | 428 |
| MalI | GATC | 3 cut(s) | 33, 351, 423 |
| MboI | GATC | 3 cut(s) | 31, 349, 421 |
| MflI | RGATCY | 1 cut(s) | 349 |
| MhlI | GDGCHC | 1 cut(s) | 255 |
| MluCI | AATT | 1 cut(s) | 242 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MnlI | CCTC | 8 cut(s) | 114, 172, 243, 272, 323, 340, 404, 516 |
| Mph1103I | ATGCAT | 1 cut(s) | 187 |
| NcoI | CCATGG | 2 cut(s) | 129, 138 |
| NdeII | GATC | 3 cut(s) | 31, 349, 421 |
| NlaIII | CATG | 5 cut(s) | 133, 142, 259, 399, 428 |
| NmuCI | GTSAC | 1 cut(s) | 428 |
| NsiI | ATGCAT | 1 cut(s) | 187 |
| PagI | TCATGA | 1 cut(s) | 255 |
| PciSI | GCTCTTC | 1 cut(s) | 332 |
| PfeI | GAWTC | 3 cut(s) | 119, 143, 259 |
| PleI | GAGTC | 1 cut(s) | 128 |
| PpsI | GAGTC | 1 cut(s) | 128 |
| PsiI | TTATAA | 1 cut(s) | 89 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| PsuI | RGATCY | 1 cut(s) | 349 |
| RsaI | GTAC | 1 cut(s) | 445 |
| RsaNI | GTAC | 1 cut(s) | 444 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SapI | GCTCTTC | 1 cut(s) | 332 |
| Sau3AI | GATC | 3 cut(s) | 31, 349, 421 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SduI | GDGCHC | 1 cut(s) | 255 |
| SfaNI | GCATC | 2 cut(s) | 172, 194 |
| SfcI | CTRYAG | 1 cut(s) | 376 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmlI | CTYRAG | 1 cut(s) | 105 |
| SmoI | CTYRAG | 1 cut(s) | 105 |
| Sse9I | AATT | 1 cut(s) | 242 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StyI | CCWWGG | 2 cut(s) | 129, 138 |
| TaqI | TCGA | 1 cut(s) | 287 |
| TasI | AATT | 1 cut(s) | 242 |
| TatI | WGTACW | 1 cut(s) | 443 |
| TfiI | GAWTC | 3 cut(s) | 119, 143, 259 |
| TseFI | GTSAC | 1 cut(s) | 428 |
| Tsp45I | GTSAC | 1 cut(s) | 428 |
| TspDTI | ATGAA | 5 cut(s) | 153, 207, 251, 255, 404 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 379 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 136 |
| Zsp2I | ATGCAT | 1 cut(s) | 187 |