Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

6104589 .. 6105335

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G006340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGTCTTCAAGAAGCTAAGGTTGGTGGTGATCAAAATAGGAAAGAAAGCGAGATTGGTTATCAGGGTTTTGAAGATAACTGGGTTATAAAGGAAGACTACCCTGAAGATATTTGTGATTCAAGATCCATGGACTCCATGGAATCGTCTTCGTCTTCATTTTCATCAGATTTGGTCGAGGATGTATCTTCTTCTTCTTCTTCTTCATCTTCAAATGGACCTCTTTATGAATTATCTGAGCTCATGATTCATCTTCCTATAAGGAGAGGTTTATCGAAGTATTATCAAGGAAAGTCGCAATCTTTCACATCTCTGGGAGGTGTGAAGAGCTTAGAGGATCTTGCAAAGAAGGTGGCAGCACCCTATAGAAGGAAAATGAAGCCATGCAAGAGCTATGGAGGTGGTTTAGATCATGGTCACAAATCTTTTAGTACAAGTCCGAAAGCCATTATCTCAAAGAAAGCTATTTCAAAGGGTTCTTTCTTATATTCCGTAAGTAGTAATACCAAGAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.85

Weight (kDa)

8.94

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AclWI	GGATC	2 cut(s)	120, 345
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	11, 74, 123, 213, 471
AjuI	GAANNNNNNNTTGG	3 cut(s)	38, 39, 71
AluBI	AGCT	5 cut(s)	17, 241, 330, 393, 464
AluI	AGCT	5 cut(s)	17, 241, 330, 393, 464
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	120, 345
ApeKI	GCWGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	3 cut(s)	102, 141, 147
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	3 cut(s)	102, 141, 147
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	129, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	129, 138
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	31, 125, 337, 409
Bsp19I	CCATGG	2 cut(s)	129, 138
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	2 cut(s)	120, 345
BspQI	GCTCTTC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	129, 138
BssMI	GATC	4 cut(s)	31, 125, 337, 409
BssT1I	CCWWGG	2 cut(s)	129, 138
Bst6I	CTCTTC	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	18, 237, 331
BstDSI	CCRYGG	2 cut(s)	129, 138
BstENI	CCTNNNNNAGG	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	34, 128, 340, 412
BstMBI	GATC	4 cut(s)	31, 125, 337, 409
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	3 cut(s)	102, 141, 147
BstX2I	RGATCY	2 cut(s)	125, 337
BstYI	RGATCY	2 cut(s)	125, 337
BtgI	CCRYGG	2 cut(s)	129, 138
BtsCI	GGATG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	5 cut(s)	130, 139, 244, 384, 413
CviJI	RGCY	7 cut(s)	17, 241, 330, 382, 393, 446, 464
CviKI_1	RGCY	7 cut(s)	17, 241, 330, 382, 393, 446, 464
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	3 cut(s)	18, 237, 331
DpnI	GATC	4 cut(s)	33, 127, 339, 411
DpnII	GATC	4 cut(s)	31, 125, 337, 409
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	129, 138
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	129, 138
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	129, 138
FaeI	CATG	5 cut(s)	133, 142, 247, 387, 416
FatI	CATG	5 cut(s)	129, 138, 243, 383, 412
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	357
Hin1II	CATG	5 cut(s)	133, 142, 247, 387, 416
HinfI	GANTC	4 cut(s)	119, 134, 143, 247
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	169, 238, 441
Hpy188III	TCNNGA	3 cut(s)	11, 123, 244
HpyAV	CCTTC	2 cut(s)	343, 363
HpyCH4V	TGCA	2 cut(s)	344, 387
HpyF3I	CTNAG	3 cut(s)	18, 237, 331
Hsp92II	CATG	5 cut(s)	133, 142, 247, 387, 416
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 125, 337, 409
LguI	GCTCTTC	1 cut(s)	320
LpnPI	CCDG	4 cut(s)	50, 67, 117, 299
Lsp1109I	GCAGC	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	4 cut(s)	33, 127, 339, 411
MboI	GATC	4 cut(s)	31, 125, 337, 409
MflI	RGATCY	2 cut(s)	125, 337
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	172, 231, 260, 311, 328, 392, 504
NcoI	CCATGG	2 cut(s)	129, 138
NdeII	GATC	4 cut(s)	31, 125, 337, 409
NlaIII	CATG	5 cut(s)	133, 142, 247, 387, 416
NmuCI	GTSAC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	119, 143, 247
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	125, 337
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	320
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	4 cut(s)	31, 125, 337, 409
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	129, 138
TaqI	TCGA	2 cut(s)	177, 275
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	119, 143, 247
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	6 cut(s)	147, 153, 195, 239, 243, 392
TspGWI	ACGGA	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.