Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

5512855 .. 5513842

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1067400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTCGTCGTGAAGAAGAAAAGAGAGTTTTGGGGAATCAAAATACAGAAGAAAATCATGCTTATCAAGTTAAACAGGAATGCTGGGTTTTCAAGGAAGAACATGAAGAAGATATTTGTGACACGAGATCTGTTGAACCCTTCATGGAAAACTCTATGAGCTCCGCGGAATCATCATTTTCATCTGACTTGGTTGAAGATGCTGCTTCTTCTTCTTCTACCTCGTCGTCGTCGTCGAACGGCCCGCTTTTCGAATTATCTGACCTAATGATCCATCTTCCTATCAAGAGAGGTTTATCAAAATGTTACGAAGGAAAGTCACAATCGTTCACAACCCTAGCAAGTGCGACGAGCTTGGAGGATCTGGCAAAAAAGGTGGAACCTTACAGGAAGAAAATGAAGCCATGCAAGAGCTTTGGTGGCGCTTTTGATGGTCACAAATCACCATATCTTTCTCCAAAATCCATTATTTCAAAGAAAACTTCGAGAGGAGGGTCTTTCTTGTATTCCATTAGTAACAGAGGAAAATTATTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.85

Weight (kDa)

6.91

Isoelectric Point (pI)

62.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	3 cut(s)	165, 167, 245
AclWI	GGATC	2 cut(s)	265, 369
AgsI	TTSAA	4 cut(s)	94, 137, 197, 474
AluBI	AGCT	3 cut(s)	162, 354, 414
AluI	AGCT	3 cut(s)	162, 354, 414
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	265, 369
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	435
AsuII	TTCGAA	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	282, 425
BceAI	ACGGC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	426
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	128, 270, 361
BspACI	CCGC	3 cut(s)	165, 167, 245
BspANI	GGCC	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	265, 369
BspT104I	TTCGAA	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	128, 270, 361
BssSI	CACGAG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	131, 273, 364
BstMBI	GATC	3 cut(s)	128, 270, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	128, 361
BstYI	RGATCY	2 cut(s)	128, 361
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	242
Cfr42I	CCGCGG	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	4 cut(s)	59, 104, 145, 405
CviJI	RGCY	5 cut(s)	162, 243, 354, 403, 414
CviKI_1	RGCY	5 cut(s)	162, 243, 354, 403, 414
DpnI	GATC	3 cut(s)	130, 272, 363
DpnII	GATC	3 cut(s)	128, 270, 361
Ecl136II	GAGCTC	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	4 cut(s)	62, 107, 148, 408
FaiI	YATR	6 cut(s)	60, 105, 146, 158, 406, 448
FatI	CATG	4 cut(s)	58, 103, 144, 404
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	204
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	62, 107, 148, 408
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	37, 170
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	187, 262
Hpy188III	TCNNGA	3 cut(s)	11, 286, 486
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	6 cut(s)	12, 229, 232, 235, 238, 352
HpyAV	CCTTC	2 cut(s)	151, 305
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	62, 107, 148, 408
HspAI	GCGC	1 cut(s)	423
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	128, 270, 361
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	62, 70, 350, 373
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	5 cut(s)	119, 305, 318, 434, 515
MalI	GATC	3 cut(s)	130, 272, 363
MboI	GATC	3 cut(s)	128, 270, 361
MflI	RGATCY	2 cut(s)	128, 361
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	2 cut(s)	254, 527
MnlI	CCTC	6 cut(s)	232, 284, 352, 482, 485, 515
MseI	TTAA	2 cut(s)	72, 538
MspA1I	CMGCKG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	86
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeII	GATC	3 cut(s)	128, 270, 361
NlaIII	CATG	4 cut(s)	62, 107, 148, 408
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	3 cut(s)	119, 318, 434
NspV	TTCGAA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 233
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	37, 170
PkrI	GCNGC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	128, 361
SacI	GAGCTC	1 cut(s)	164
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	72, 538
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	128, 270, 361
Sau96I	GGNCC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	8 cut(s)	164, 224, 267, 295, 356, 378, 385, 416
SfaNI	GCATC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	252
SgrBI	CCGCGG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	254, 527
SsiI	CCGC	3 cut(s)	165, 167, 245
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	164
TaqI	TCGA	3 cut(s)	236, 252, 485
TasI	AATT	2 cut(s)	254, 527
TfiI	GAWTC	2 cut(s)	37, 170
Tru1I	TTAA	2 cut(s)	72, 538
Tru9I	TTAA	2 cut(s)	72, 538
TseFI	GTSAC	3 cut(s)	119, 318, 434
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	3 cut(s)	119, 318, 434
TspDTI	ATGAA	4 cut(s)	120, 133, 171, 413
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.