Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

21182288 .. 21188851

Gene Structure 6564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1181600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTCTCACAAAATATGACAACTACACAAAAAGGGAAGATAGCTGGGTAATCATGGAAGGAGATCATGATGATATGTACGACACAACATCCTCGACATCGATTTCGAATAGATCATCGACATCTTCATCGGACTTAGTAGATGATGCATCTTCATCGTCAATGTCGTCGTCATGTTCTTCTTCCTTTCATTCTCATGGATCGTTGTTCGACTTGTCAGATCTCATGGCTCAGCTACCCATCAAAAGAGGACTTTCAAAGTATTTTGAGGGCAAGTGCCAATCCTTTACATCTTTATCAAAGGCCAAGAGCATTGAAGATCTTGCAAAGAAAGAGTCTCCATATAAAAAAAGAAAGGCAATAAAAGCAAGCAAGAGCTATGGCGGTGGCTTGAGTTCTTACAGATCGTACACACTTCCGAAGGCCACCATTTCTAAGAGTAAGAAGCCATCAACTACTACATCTTTTTCCAGCAGATCTAGAGGCAGCTCTTTCGGCATAAATAACAATATGCTCCCTCCAATTCCAGTCAGGGAACGAAGCATCTGGAGTCAGGTATGGCAGCAGGTACAACAGCGGTGCGAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.75

Weight (kDa)

9.45

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	556
AciI	CCGC	2 cut(s)	384, 577
AclWI	GGATC	1 cut(s)	208
AfaI	GTAC	3 cut(s)	80, 410, 570
AgsI	TTSAA	2 cut(s)	258, 317
AluBI	AGCT	4 cut(s)	45, 235, 378, 489
AluI	AGCT	4 cut(s)	45, 235, 378, 489
Alw26I	GTCTC	3 cut(s)	11, 342, 578
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	303, 423
ApeKI	GCWGC	2 cut(s)	486, 562
ArsI	GACNNNNNNTTYG	4 cut(s)	88, 120, 320, 352
AsuII	TTCGAA	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	498, 574
BccI	CCATC	2 cut(s)	248, 457
BcgI	CGANNNNNNTGC	4 cut(s)	138, 172, 475, 509
BcoDI	GTCTC	3 cut(s)	11, 342, 578
BfaI	CTAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	556
BglII	AGATCT	3 cut(s)	220, 319, 476
BisI	GCNGC	2 cut(s)	487, 563
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	2 cut(s)	488, 564
BmsI	GCATC	3 cut(s)	136, 158, 552
BpmI	CTGGAG	1 cut(s)	568
Bpu1102I	GCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	412
Bsa29I	ATCGAT	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	101
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	498, 574
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	2 cut(s)	305, 425
BshVI	ATCGAT	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	11, 342, 578
BsnI	GGCC	2 cut(s)	305, 425
Bso31I	GGTCTC	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	107
Bsp143I	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	2 cut(s)	384, 577
BspANI	GGCC	2 cut(s)	305, 425
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	527
BssMI	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	136, 231, 435
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	7 cut(s)	67, 116, 203, 223, 322, 407, 479
BstMAI	GTCTC	3 cut(s)	11, 342, 578
BstMBI	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 495
BstV1I	GCAGC	2 cut(s)	498, 574
BstX2I	RGATCY	3 cut(s)	220, 319, 476
BstYI	RGATCY	3 cut(s)	220, 319, 476
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	305, 425
BsuTUI	ATCGAT	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	370
CciI	TCATGA	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	79, 409, 569
CviAII	CATG	5 cut(s)	55, 68, 174, 197, 226
CviJI	RGCY	9 cut(s)	45, 230, 235, 305, 378, 390, 425, 448, 489
CviKI_1	RGCY	9 cut(s)	45, 230, 235, 305, 378, 390, 425, 448, 489
CviQI	GTAC	3 cut(s)	79, 409, 569
DdeI	CTNAG	3 cut(s)	136, 231, 435
DpnI	GATC	7 cut(s)	66, 115, 202, 222, 321, 406, 478
DpnII	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
Eco31I	GGTCTC	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	5 cut(s)	58, 71, 177, 200, 229
FatI	CATG	5 cut(s)	54, 67, 173, 196, 225
Fnu4HI	GCNGC	2 cut(s)	487, 563
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	487, 563
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	2 cut(s)	487, 563
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	305, 425
Hin1II	CATG	5 cut(s)	58, 71, 177, 200, 229
HinfI	GANTC	2 cut(s)	335, 550
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	133, 220, 420
Hpy188III	TCNNGA	3 cut(s)	68, 480, 547
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	53, 415
HpyCH4V	TGCA	2 cut(s)	149, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 495
HpyF3I	CTNAG	3 cut(s)	136, 231, 435
Hsp92II	CATG	5 cut(s)	58, 71, 177, 200, 229
Kzo9I	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	7 cut(s)	31, 484, 517, 532, 539, 540, 551
Lsp1109I	GCAGC	2 cut(s)	498, 574
LweI	GCATC	3 cut(s)	136, 158, 552
MaeI	CTAG	1 cut(s)	480
MalI	GATC	7 cut(s)	66, 115, 202, 222, 321, 406, 478
MboI	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
MboII	GAAGA	6 cut(s)	50, 117, 144, 171, 174, 329
MflI	RGATCY	3 cut(s)	220, 319, 476
MluCI	AATT	1 cut(s)	522
MlyI	GAGTC	2 cut(s)	344, 559
MnlI	CCTC	5 cut(s)	103, 242, 262, 476, 528
Mph1103I	ATGCAT	1 cut(s)	151
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	365, 495
NdeII	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
NlaIII	CATG	5 cut(s)	58, 71, 177, 200, 229
NsiI	ATGCAT	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	107
PagI	TCATGA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	488, 564
PleI	GAGTC	2 cut(s)	343, 558
PpsI	GAGTC	2 cut(s)	343, 558
PspFI	CCCAGC	1 cut(s)	45
PsuI	RGATCY	3 cut(s)	220, 319, 476
RsaI	GTAC	3 cut(s)	80, 410, 570
RsaNI	GTAC	3 cut(s)	79, 409, 569
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	2 cut(s)	487, 563
Sau3AI	GATC	7 cut(s)	64, 113, 200, 220, 319, 404, 476
SchI	GAGTC	2 cut(s)	344, 559
SetI	ASST	6 cut(s)	47, 237, 380, 491, 558, 570
SfaNI	GCATC	3 cut(s)	136, 158, 552
SfuI	TTCGAA	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	1 cut(s)	522
SsiI	CCGC	2 cut(s)	384, 577
SspMI	CTAG	1 cut(s)	480
TaqI	TCGA	5 cut(s)	95, 101, 107, 119, 210
TasI	AATT	1 cut(s)	522
TseI	GCWGC	2 cut(s)	486, 562
TspDTI	ATGAA	3 cut(s)	117, 144, 179
XbaI	TCTAGA	1 cut(s)	479
XspI	CTAG	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.