Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012654

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

217747 .. 218776

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12654g00170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTGCAGGTAGTGACGAACAAATGATTCAGGGTGGAAGCTCGATCACAAATTATGACAACTACACAAAAAGGGAAGATAGCTGGGTGATGGAAGGAGATCATGATGATCATGATGATATGTACGACACAACATCCTTGACGTCGATTTCAAATATATCATCGACATCTTCATCGGACTTAGTAGATGATGCATCTTCACCATCAACATCATCATCATGTTCTTCTTCCTTTCATTCTCATGGATCGTTGCTCGACTTGACAGATCTCATGACTCAGCTACCCATCAATAGAGGACTTTCAAAGTATTTTGAAGGCAAGTGCCAATCCTTTACATGTTTATCAAAGGTAAAGAGCATTCAAGATCTTGCAAAGAAAGAGTCTCCATATAATCAAAGAAAGGCACTAAAAGGAAGCGAGAGCTATGGCGGTGGCTTGGGTTCTTACAGATCGTACACACATCCGAAGGCCGCGATTTCTAAGAGTAAGAAGGCATCAACTACTTCATCTTTTTCGAGCAGATCAAGAGGCAGCTCTTTTCTCATAAATAACAACACGCTCCCTCCAACTCCAGTAAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.0

Weight (kDa)

6.95

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AccII	CGCG	1 cut(s)	473
AciI	CCGC	2 cut(s)	429, 471
AclWI	GGATC	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	125, 455
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	153, 303, 314, 362
AluBI	AGCT	5 cut(s)	42, 84, 280, 423, 534
AluI	AGCT	5 cut(s)	42, 84, 280, 423, 534
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	531
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AsuHPI	GGTGA	2 cut(s)	100, 192
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	3 cut(s)	85, 211, 293
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	387
BglII	AGATCT	2 cut(s)	265, 364
BisI	GCNGC	2 cut(s)	471, 532
BlsI	GCNGC	2 cut(s)	472, 533
BmsI	GCATC	3 cut(s)	181, 203, 503
BpmI	CTGGAG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bse1I	ACTGG	1 cut(s)	572
BseGI	GGATG	2 cut(s)	134, 460
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	543
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	470
Bsp143I	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
BspACI	CCGC	2 cut(s)	429, 471
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	473
BspHI	TCATGA	3 cut(s)	103, 112, 270
BspPI	GGATC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	572
BssMI	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
BssNI	GRCGYC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	181, 276, 480
BstF5I	GGATG	2 cut(s)	134, 460
BstFNI	CGCG	1 cut(s)	473
BstKTI	GATC	8 cut(s)	48, 103, 112, 248, 268, 367, 452, 524
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
BstNSI	RCATGY	1 cut(s)	339
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	2 cut(s)	265, 364
BstYI	RGATCY	2 cut(s)	265, 364
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	2 cut(s)	134, 460
CciI	TCATGA	3 cut(s)	103, 112, 270
Csp6I	GTAC	2 cut(s)	124, 454
CviAII	CATG	6 cut(s)	104, 113, 219, 242, 271, 336
CviJI	RGCY	7 cut(s)	42, 84, 280, 423, 435, 470, 534
CviKI_1	RGCY	7 cut(s)	42, 84, 280, 423, 435, 470, 534
CviQI	GTAC	2 cut(s)	124, 454
DdeI	CTNAG	3 cut(s)	181, 276, 480
DpnI	GATC	8 cut(s)	47, 102, 111, 247, 267, 366, 451, 523
DpnII	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	6 cut(s)	107, 116, 222, 245, 274, 339
FatI	CATG	6 cut(s)	103, 112, 218, 241, 270, 335
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	471, 532
FokI	GGATG	2 cut(s)	121, 447
Fsp4HI	GCNGC	2 cut(s)	471, 532
GluI	GCNGC	2 cut(s)	471, 532
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	6 cut(s)	107, 116, 222, 245, 274, 339
HinfI	GANTC	3 cut(s)	28, 274, 380
HphI	GGTGA	2 cut(s)	100, 192
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	2 cut(s)	178, 465
Hpy188III	TCNNGA	5 cut(s)	104, 113, 271, 362, 525
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	4 cut(s)	89, 308, 460, 484
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	8, 194, 371
HpyF3I	CTNAG	3 cut(s)	181, 276, 480
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	6 cut(s)	107, 116, 222, 245, 274, 339
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
LmnI	GCTCC	1 cut(s)	564
LpnPI	CCDG	2 cut(s)	17, 70
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	3 cut(s)	181, 203, 503
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	8 cut(s)	47, 102, 111, 247, 267, 366, 451, 523
MboI	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
MboII	GAAGA	5 cut(s)	89, 162, 189, 216, 219
MflI	RGATCY	2 cut(s)	265, 364
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	268, 389
MnlI	CCTC	3 cut(s)	287, 521, 573
Mph1103I	ATGCAT	1 cut(s)	196
MslI	CAYNNNNRTG	2 cut(s)	217, 240
Mva1269I	GAATGC	1 cut(s)	357
MvnI	CGCG	1 cut(s)	473
NdeII	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
NlaIII	CATG	6 cut(s)	107, 116, 222, 245, 274, 339
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	339
PagI	TCATGA	3 cut(s)	103, 112, 270
PciI	ACATGT	1 cut(s)	335
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	472, 533
PleI	GAGTC	2 cut(s)	268, 388
PpsI	GAGTC	2 cut(s)	268, 388
PscI	ACATGT	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	84
PsuI	RGATCY	2 cut(s)	265, 364
RsaI	GTAC	2 cut(s)	125, 455
RsaNI	GTAC	2 cut(s)	124, 454
RseI	CAYNNNNRTG	2 cut(s)	217, 240
SatI	GCNGC	2 cut(s)	471, 532
Sau3AI	GATC	8 cut(s)	45, 100, 109, 245, 265, 364, 449, 521
SchI	GAGTC	2 cut(s)	268, 389
SetI	ASST	8 cut(s)	13, 44, 86, 146, 282, 351, 425, 536
SfaNI	GCATC	3 cut(s)	181, 203, 503
SmiMI	CAYNNNNRTG	2 cut(s)	217, 240
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	429, 471
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	5 cut(s)	44, 146, 164, 255, 515
TasI	AATT	1 cut(s)	52
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	162, 224, 495
XceI	RCATGY	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.