RLG00000019901

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003411
Physical Location & Seq
Reverse (-)
58336487 .. 58339765
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019901

Sequence Viewer

Length: 783 bp
ATGGGTGAAGGTACTGGAAAACAAATGGTTGAGGGTGCATACTCGATCAGACAATATGATAACTACGCGAAAAGGGAAGAGAGTTGGGAGATCATGGAAGGAGATGACAACCATGATCGTGGTAATATGTCCGACACCACTTCGGCTGCATCGAATCGATCTACATATTCATCAGACTTTGCGGATGATGCATCTTCATCGGCATCGTCCTCGTGTTCTTCTTCCTTGCGTTCCGGTGGATCTCTGTACGACTTGTCAGATCTCATGGCCCAGTTGCCCATCAAGAGAGGGCTTTCTAAGTATTTTAAAGGCAAGAGTCAGTCTTTTACATTTTTATCAAAAGTGAATAGTATTGAAGATCTTGCAAAGAAAGAGACTCCGTATCAGAGATCAAAAGCACTAAAATCATGCAAGAGCTATGGTGGTGGCTTAGGTACCCAAAGATCATACACTCTAATTCCTAAGGCCACCATATCTAAAGTCAAGAAGGCCTCGAGAGGTCCTTTGTCATCTGCATCTCTTTCCAGTAGAAGAGGCACCTCTTTAGCAAAAGGAACAGACCACAACAGCGCCTCTGTTCCGGTTAGTGGTTGGCAGCCCATAAAGAACATCAGAGACCGTCTTGGGATAGATATTGCAAAGTGGGCAGTTGATGAATATTACGGTTGGGATCATATTAAGTTGGTGTTTCAAAATGTGACCAGGGGCGACTACAAAGATGTCCAAGATGGGATTCTGTATCGGCTCTTCATTACCGCTAAAGACGATAGACTCATTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.68

Weight (kDa)

9.29

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 201 - 256 3.9e-07 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 2 cut(s) 434, 536
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 182, 756
AclWI GGATC 2 cut(s) 247, 678
AfaI GTAC 3 cut(s) 13, 248, 436
AfiI CCNNNNNNNGG 1 cut(s) 587
AgsI TTSAA 2 cut(s) 356, 692
AjnI CCWGG 1 cut(s) 701
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
Alw26I GTCTC 2 cut(s) 368, 609
AlwI GGATC 2 cut(s) 247, 678
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 3 cut(s) 267, 465, 489
ApeKI GCWGC 2 cut(s) 146, 595
Asp718I GGTACC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 268, 500
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 462
BanI GGYRCC 2 cut(s) 434, 536
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BauI CACGAG 1 cut(s) 211
BbvI GCAGC 2 cut(s) 133, 607
BccI CCATC 2 cut(s) 287, 722
BcgI CGANNNNNNTGC 4 cut(s) 180, 192, 214, 226
BciT130I CCWGG 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 368, 609
BfoI RGCGCY 1 cut(s) 573
BglII AGATCT 2 cut(s) 259, 358
BisI GCNGC 2 cut(s) 147, 596
BlsI GCNGC 2 cut(s) 148, 597
Bme1390I CCNGG 1 cut(s) 703
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 268, 500
BmiI GGNNCC 2 cut(s) 436, 538
BmrFI CCNGG 1 cut(s) 703
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 5 cut(s) 158, 178, 200, 212, 524
BmuI ACTGGG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 430
Bsa29I ATCGAT 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 702
BsaWI WCCGGW 2 cut(s) 233, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 3 cut(s) 19, 271, 525
Bse21I CCTNAGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 703
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 702
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 587
BseNI ACTGG 3 cut(s) 19, 271, 525
BseXI GCAGC 2 cut(s) 133, 607
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 269, 467, 491
BshNI GGYRCC 2 cut(s) 434, 536
BshVI ATCGAT 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 2 cut(s) 234, 581
BslI CCNNNNNNNGG 1 cut(s) 587
BsmAI GTCTC 2 cut(s) 368, 609
BsnI GGCC 3 cut(s) 269, 467, 491
Bso31I GGTCTC 1 cut(s) 609
BsoBI CYCGRG 1 cut(s) 493
BspACI CCGC 2 cut(s) 182, 756
BspANI GGCC 3 cut(s) 269, 467, 491
BspDI ATCGAT 1 cut(s) 157
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 436, 538
BspPI GGATC 2 cut(s) 247, 678
BspQI GCTCTTC 1 cut(s) 752
BspT107I GGYRCC 2 cut(s) 434, 536
BspTNI GGTCTC 1 cut(s) 609
BsrI ACTGG 3 cut(s) 19, 271, 525
BssECI CCNNGG 1 cut(s) 702
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 2 cut(s) 620, 665
Bst6I CTCTTC 3 cut(s) 72, 526, 752
BstDEI CTNAG 3 cut(s) 297, 430, 462
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstMAI GTCTC 2 cut(s) 368, 609
BstMWI GCNNNNNNNGC 2 cut(s) 188, 644
BstNI CCWGG 1 cut(s) 703
BstSCI CCNGG 1 cut(s) 701
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 133, 607
BstX2I RGATCY 3 cut(s) 239, 259, 358
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 3 cut(s) 239, 259, 358
Bsu15I ATCGAT 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 3 cut(s) 269, 467, 491
BsuTUI ATCGAT 1 cut(s) 157
BtsCI GGATG 1 cut(s) 190
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 268, 500
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 3 cut(s) 12, 247, 435
CviAII CATG 4 cut(s) 94, 113, 265, 408
CviJI RGCY 9 cut(s) 146, 269, 292, 417, 429, 467, 491, 598, 745
CviKI_1 RGCY 9 cut(s) 146, 269, 292, 417, 429, 467, 491, 598, 745
CviQI GTAC 3 cut(s) 12, 247, 435
DdeI CTNAG 3 cut(s) 297, 430, 462
DraI TTTAAA 1 cut(s) 307
Eam1104I CTCTTC 3 cut(s) 72, 526, 752
EarI CTCTTC 3 cut(s) 72, 526, 752
Eco147I AGGCCT 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 193
FaeI CATG 4 cut(s) 97, 116, 268, 411
FatI CATG 4 cut(s) 93, 112, 264, 407
Fnu4HI GCNGC 2 cut(s) 147, 596
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 147, 596
GlaI GCGC 1 cut(s) 571
GluI GCNGC 2 cut(s) 147, 596
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 3 cut(s) 269, 467, 491
HapII CCGG 2 cut(s) 234, 581
HhaI GCGC 1 cut(s) 572
Hin1II CATG 4 cut(s) 97, 116, 268, 411
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HinfI GANTC 5 cut(s) 154, 316, 376, 733, 771
HpaII CCGG 2 cut(s) 234, 581
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 6 cut(s) 50, 133, 175, 259, 387, 614
Hpy188III TCNNGA 3 cut(s) 283, 484, 495
HpyAV CCTTC 2 cut(s) 92, 481
HpyCH4III ACNGT 2 cut(s) 620, 665
HpyCH4V TGCA 7 cut(s) 38, 149, 191, 365, 411, 515, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 644
HpyF3I CTNAG 3 cut(s) 297, 430, 462
Hsp92II CATG 4 cut(s) 97, 116, 268, 411
HspAI GCGC 1 cut(s) 570
KpnI GGTACC 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 752
LpnPI CCDG 6 cut(s) 247, 284, 538, 594, 688, 715
Lsp1109I GCAGC 2 cut(s) 133, 607
LweI GCATC 5 cut(s) 158, 178, 200, 212, 524
MaeIII GTNAC 1 cut(s) 697
MboII GAAGA 7 cut(s) 89, 186, 210, 213, 368, 543, 739
MflI RGATCY 3 cut(s) 239, 259, 358
MluCI AATT 1 cut(s) 456
MlyI GAGTC 3 cut(s) 325, 370, 765
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 8 cut(s) 25, 220, 281, 491, 502, 527, 550, 583
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 3 cut(s) 306, 678, 781
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 2 cut(s) 234, 581
MspR9I CCNGG 1 cut(s) 703
MvaI CCWGG 1 cut(s) 703
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 188, 644
NlaIII CATG 4 cut(s) 97, 116, 268, 411
NlaIV GGNNCC 2 cut(s) 436, 538
NmuCI GTSAC 1 cut(s) 697
NsiI ATGCAT 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 493
PceI AGGCCT 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 752
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PfeI GAWTC 2 cut(s) 154, 733
PkrI GCNGC 2 cut(s) 148, 597
PleI GAGTC 3 cut(s) 324, 370, 765
PpsI GAGTC 3 cut(s) 324, 370, 765
PpuMI RGGWCCY 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 701
PspGI CCWGG 1 cut(s) 701
PspN4I GGNNCC 2 cut(s) 436, 538
PspPI GGNCC 2 cut(s) 268, 500
PspPPI RGGWCCY 1 cut(s) 500
PsuI RGATCY 3 cut(s) 239, 259, 358
RsaI GTAC 3 cut(s) 13, 248, 436
RsaNI GTAC 3 cut(s) 12, 247, 435
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 3 cut(s) 306, 678, 781
SatI GCNGC 2 cut(s) 147, 596
Sau96I GGNCC 2 cut(s) 268, 500
SchI GAGTC 3 cut(s) 325, 370, 765
ScrFI CCNGG 1 cut(s) 703
SetI ASST 5 cut(s) 13, 419, 436, 502, 542
SfaNI GCATC 5 cut(s) 158, 178, 200, 212, 524
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 1 cut(s) 456
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 2 cut(s) 182, 756
SspI AATATT 1 cut(s) 659
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 701
TaaI ACNGT 2 cut(s) 620, 665
TaqI TCGA 4 cut(s) 44, 152, 157, 494
TasI AATT 1 cut(s) 456
TfiI GAWTC 2 cut(s) 154, 733
Tru1I TTAA 3 cut(s) 306, 678, 781
Tru9I TTAA 3 cut(s) 306, 678, 781
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 2 cut(s) 146, 595
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 5 cut(s) 159, 186, 669, 739, 767
TspGWI ACGGA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.