Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

33976345 .. 33977641

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1246900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTTCTGGGTGGAAGCTCGATCACAAATTATGACAACTACACAAAAAGGGAAGATAGCTGGGTGATCATGGAAGGAAATCATGATGATCATGATGATATGTACGACACAACATTCTCGACGTCGATTTCGAATAGATCATCGACATCTTCATCGGACTTAGTAGATGATGCATCTTCACCATCAACATCATCATCATGTTCTTCTTCCTTTCATTCTCATGGATCGTTGCTCGACTTGTCAGATCTCATGGCTCAGCTACCCATCAAGAGAGGACTTTCAAAGTATTTTGAAGGCAAGTGCCAATCCTTTACACGTTTATCAAAGGTAAAGAGCATTGAAGATCTTGCAAAGAAAAAGTCTCCATATAATCAAAGAAAGGCACTAAAAGGAAGCAAGAGCTATGGCGGTGGCTTGGGTTCTTACAGATCGTACACACTTCCGAAGGCCACCATTTCTAAGAGTAAGAAGGCATCAACTACTTCATCTTTTTCGAGCAGATCAAGAGGCAGCACTTTTGGCATAAATAACATCACGCTCCCTCCAACTCCAGTAAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.39

Weight (kDa)

9.54

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	104, 434
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	282, 293, 341
AluBI	AGCT	4 cut(s)	18, 60, 259, 402
AluI	AGCT	4 cut(s)	18, 60, 259, 402
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	510
ArsI	GACNNNNNNTTYG	4 cut(s)	112, 144, 344, 376
AsuHPI	GGTGA	2 cut(s)	76, 171
AsuII	TTCGAA	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	190, 272
BclI	TGATCA	2 cut(s)	66, 88
BcoDI	GTCTC	1 cut(s)	366
BglII	AGATCT	2 cut(s)	244, 343
BisI	GCNGC	1 cut(s)	511
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	512
BmsI	GCATC	3 cut(s)	160, 182, 482
BpmI	CTGGAG	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse1I	ACTGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	522
BseYI	CCCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	131
Bsp143I	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	2 cut(s)	82, 91
BspPI	GGATC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	551
BssMI	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
BssNI	GRCGYC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	160, 255, 459
BstKTI	GATC	9 cut(s)	24, 69, 91, 140, 227, 247, 346, 431, 503
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	244, 343
BstYI	RGATCY	2 cut(s)	244, 343
BsuRI	GGCC	1 cut(s)	449
CciI	TCATGA	2 cut(s)	82, 91
Csp6I	GTAC	2 cut(s)	103, 433
CviAII	CATG	6 cut(s)	70, 83, 92, 198, 221, 250
CviJI	RGCY	7 cut(s)	18, 60, 254, 259, 402, 414, 449
CviKI_1	RGCY	7 cut(s)	18, 60, 254, 259, 402, 414, 449
CviQI	GTAC	2 cut(s)	103, 433
DdeI	CTNAG	3 cut(s)	160, 255, 459
DpnI	GATC	9 cut(s)	23, 68, 90, 139, 226, 246, 345, 430, 502
DpnII	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	6 cut(s)	73, 86, 95, 201, 224, 253
FatI	CATG	6 cut(s)	69, 82, 91, 197, 220, 249
FbaI	TGATCA	2 cut(s)	66, 88
Fnu4HI	GCNGC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	511
GluI	GCNGC	1 cut(s)	511
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	6 cut(s)	73, 86, 95, 201, 224, 253
HphI	GGTGA	2 cut(s)	76, 171
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	157, 244, 444
Hpy188III	TCNNGA	5 cut(s)	83, 92, 118, 268, 504
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	4 cut(s)	68, 287, 439, 463
HpyCH4IV	ACGT	2 cut(s)	122, 316
HpyCH4V	TGCA	2 cut(s)	173, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	519
HpyF3I	CTNAG	3 cut(s)	160, 255, 459
HpySE526I	ACGT	2 cut(s)	122, 316
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	6 cut(s)	73, 86, 95, 201, 224, 253
Ksp22I	TGATCA	2 cut(s)	66, 88
Kzo9I	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
LmnI	GCTCC	1 cut(s)	543
LpnPI	CCDG	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	3 cut(s)	160, 182, 482
MaeII	ACGT	2 cut(s)	122, 316
MalI	GATC	9 cut(s)	23, 68, 90, 139, 226, 246, 345, 430, 502
MboI	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
MboII	GAAGA	6 cut(s)	65, 141, 168, 195, 198, 353
MflI	RGATCY	2 cut(s)	244, 343
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	3 cut(s)	266, 500, 552
Mph1103I	ATGCAT	1 cut(s)	175
MslI	CAYNNNNRTG	2 cut(s)	196, 219
MwoI	GCNNNNNNNGC	1 cut(s)	519
NdeII	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
NlaIII	CATG	6 cut(s)	73, 86, 95, 201, 224, 253
NsiI	ATGCAT	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	131
PagI	TCATGA	2 cut(s)	82, 91
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	60
PsuI	RGATCY	2 cut(s)	244, 343
RsaI	GTAC	2 cut(s)	104, 434
RsaNI	GTAC	2 cut(s)	103, 433
RseI	CAYNNNNRTG	2 cut(s)	196, 219
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	9 cut(s)	21, 66, 88, 137, 224, 244, 343, 428, 500
SetI	ASST	7 cut(s)	20, 62, 125, 261, 319, 330, 404
SfaNI	GCATC	3 cut(s)	160, 182, 482
SfuI	TTCGAA	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	196, 219
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	408
TaiI	ACGT	2 cut(s)	125, 319
TaqI	TCGA	7 cut(s)	20, 119, 125, 131, 143, 234, 494
TasI	AATT	1 cut(s)	28
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	3 cut(s)	141, 203, 474
ZraI	GACGTC	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.