Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

3390537 .. 3391795

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTATTCAAGAAGCTGAGGTTGTTGGTGATCAGAATAGGAAAGAAAGCGAGAAAGGTTATCAGGGTTTTGAAGATAACTGGGTTGTGAAGGAAGACTGCTACCCTGAAGATATTTGTGATTCAAGGTCCATGGACTCCATGGAATCGTCTTCTTCGTGTTCGTCTGATTTGGTTGAGGATGCTTCTTCTTCTTCTTCATCATCTTTTAATGGACCTTTGTATGAATTGTCTGAGCTCATGATGCATCTTCCTATAAGGAGAGGTTTATCAAAGTATTATCAAGGAAAGTCGCAATCTTTCACATCTCTGGCAGGTGTGAAGAGCTTGGAGGATCTTGCAAAGAAGGTGGCAGCTCCTTATAGAAGGAAAATGAAGCCATGCAAGAGCTATGGAGGTGGTTTGGATAATGGTCAGAAGTCTTATAGTACTAGTCCCAAAGCCATTATCTCAAAGAAAGCTATTTCAAGGGGTTCCATCAGTAGTAATACCAAGAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.36

Weight (kDa)

8.58

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	11, 74, 126, 468
AhlI	ACTAGT	1 cut(s)	431
AluBI	AGCT	6 cut(s)	17, 238, 327, 356, 390, 461
AluI	AGCT	6 cut(s)	17, 238, 327, 356, 390, 461
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	129, 215
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	129, 215
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	102, 144
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	485
BclI	TGATCA	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmcAI	AGTACT	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	129, 215
BmgT120I	GGNCC	2 cut(s)	129, 215
BmiI	GGNNCC	1 cut(s)	475
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	172, 234, 256
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	2 cut(s)	102, 144
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	132, 141
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	132, 141
BseGI	GGATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	9, 225
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	31, 334
Bsp19I	CCATGG	2 cut(s)	132, 141
BspCNI	CTCAG	2 cut(s)	10, 226
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	342
BspQI	GCTCTTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	132, 141
BssMI	GATC	2 cut(s)	31, 334
BssT1I	CCWWGG	2 cut(s)	132, 141
Bst6I	CTCTTC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	18, 234
BstDSI	CCRYGG	2 cut(s)	132, 141
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	34, 337
BstMBI	GATC	2 cut(s)	31, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	2 cut(s)	102, 144
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtgI	CCRYGG	2 cut(s)	132, 141
BtsCI	GGATG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	129, 215
Csp6I	GTAC	1 cut(s)	429
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	4 cut(s)	133, 142, 241, 381
CviJI	RGCY	8 cut(s)	17, 238, 327, 356, 379, 390, 443, 461
CviKI_1	RGCY	8 cut(s)	17, 238, 327, 356, 379, 390, 443, 461
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	18, 234
DpnI	GATC	2 cut(s)	33, 336
DpnII	GATC	2 cut(s)	31, 334
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	132, 141
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	129, 215
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	132, 141
EcoT22I	ATGCAT	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	132, 141
FaeI	CATG	4 cut(s)	136, 145, 244, 384
FaiI	YATR	9 cut(s)	134, 143, 225, 242, 257, 363, 382, 393, 426
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	4 cut(s)	132, 141, 240, 380
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	354
Hin1II	CATG	4 cut(s)	136, 145, 244, 384
HinfI	GANTC	3 cut(s)	122, 137, 146
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	36, 169, 235, 417
Hpy188III	TCNNGA	2 cut(s)	11, 241
HpyAV	CCTTC	3 cut(s)	85, 340, 360
HpyCH4V	TGCA	3 cut(s)	247, 341, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	18, 234
Hsp92II	CATG	4 cut(s)	136, 145, 244, 384
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 334
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	5 cut(s)	50, 67, 120, 296, 300
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	3 cut(s)	172, 234, 256
MaeI	CTAG	1 cut(s)	432
MalI	GATC	2 cut(s)	33, 336
MboI	GATC	2 cut(s)	31, 334
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	6 cut(s)	13, 172, 257, 325, 389, 489
Mph1103I	ATGCAT	1 cut(s)	249
MseI	TTAA	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	244
NcoI	CCATGG	2 cut(s)	132, 141
NdeII	GATC	2 cut(s)	31, 334
NlaIII	CATG	4 cut(s)	136, 145, 244, 384
NlaIV	GGNNCC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	249
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	122, 146
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	129, 215
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	31, 334
Sau96I	GGNCC	2 cut(s)	129, 215
ScaI	AGTACT	1 cut(s)	430
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	3 cut(s)	172, 234, 256
SinI	GGWCC	2 cut(s)	129, 215
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	132, 141
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	122, 146
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	189, 240, 389
VpaK11BI	GGWCC	2 cut(s)	129, 215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	430
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.