MD15G1198100.v1.1

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003411
Physical Location & Seq
Reverse (-)
15727723 .. 15728233
511 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1198100.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGAGAATTCTATGAGCTCAATGGAATCATCTTCTTCATCTGACTTGGTGGAGGATGCTTCTTCAAATTCTTCTACATCATCGTCGTCGAACGGGCCGCTTTACGAACTACCTGACCTAATGATGCATCTTCCTATCAAGAGAGGTTTATCAAAATGTTATGAAGGAAAGTCACAATCCTTCACAACCCTAGCAAGTGTGACGAGCTTAGAGGACCTTGCAAAAAAGGTGGCACCTTATAGGAAGAGAATGAAGGCATGCAATAACTTTGGTGGCGGTTTTGATGGTCACAAATCACCATATCTTTCTCCAAAAGCTATTATTTCTAAGAAAGATTCAAGAGGAAGAGGATCTTTCTTGTATTCCATTAGTAACAGAGGAAAATTGTTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.2

Weight (kDa)

9.27

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 2 cut(s) 98, 276
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 2 cut(s) 7, 67
AgsI TTSAA 2 cut(s) 66, 339
AluBI AGCT 3 cut(s) 18, 207, 317
AluI AGCT 3 cut(s) 18, 207, 317
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 1 cut(s) 358
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 7, 67
AspS9I GGNCC 2 cut(s) 95, 214
AsuHPI GGTGA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BccI CCATC 1 cut(s) 278
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 95, 214
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 3 cut(s) 46, 114, 136
BseGI GGATG 1 cut(s) 61
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 20
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 2 cut(s) 98, 276
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 232
BssMI GATC 1 cut(s) 350
Bst6I CTCTTC 2 cut(s) 239, 340
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 208, 327
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 95, 214
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 1 cut(s) 258
CviJI RGCY 4 cut(s) 18, 97, 207, 317
CviKI_1 RGCY 4 cut(s) 18, 97, 207, 317
DdeI CTNAG 2 cut(s) 208, 327
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 239, 340
EarI CTCTTC 2 cut(s) 239, 340
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 1 cut(s) 261
FaiI YATR 5 cut(s) 14, 162, 240, 259, 301
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FatI CATG 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 1 cut(s) 261
HinfI GANTC 2 cut(s) 26, 335
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 139, 339
Hpy99I CGWCG 2 cut(s) 88, 91
HpyAV CCTTC 3 cut(s) 158, 190, 247
HpyCH4V TGCA 3 cut(s) 127, 221, 261
HpyF3I CTNAG 2 cut(s) 208, 327
Hsp92II CATG 1 cut(s) 261
Kzo9I GATC 1 cut(s) 350
LpnPI CCDG 1 cut(s) 126
LweI GCATC 3 cut(s) 46, 114, 136
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 4 cut(s) 171, 199, 287, 371
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 7 cut(s) 24, 27, 54, 63, 122, 256, 357
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 7, 67, 383
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 6 cut(s) 46, 137, 205, 335, 341, 371
Mph1103I ATGCAT 1 cut(s) 129
MseI TTAA 1 cut(s) 394
NdeII GATC 1 cut(s) 350
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 171, 199, 287
NsiI ATGCAT 1 cut(s) 129
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 26, 335
PkrI GCNGC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 95, 214
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 350
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 2 cut(s) 95, 214
SduI GDGCHC 1 cut(s) 20
SetI ASST 9 cut(s) 20, 115, 120, 148, 209, 219, 231, 238, 319
SfaNI GCATC 3 cut(s) 46, 114, 136
SinI GGWCC 1 cut(s) 214
SphI GCATGC 1 cut(s) 261
Sse9I AATT 3 cut(s) 7, 67, 383
SsiI CCGC 2 cut(s) 98, 276
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 20
TaqI TCGA 1 cut(s) 89
TasI AATT 3 cut(s) 7, 67, 383
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 2 cut(s) 26, 335
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TseFI GTSAC 3 cut(s) 171, 199, 287
Tsp45I GTSAC 3 cut(s) 171, 199, 287
TspDTI ATGAA 3 cut(s) 27, 177, 266
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 7, 67
XceI RCATGY 1 cut(s) 261
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.