Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

10011938 .. 10012831

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTTGCAGGTAGTGAAGAACAAATGCTTCAAGGTCCATGCTCGATCACAAAATATGACAACTACAGAAAAAGGGAAGATAGCTGGATGATCGTGAATGAAGATGATGGTCATGATGATATGTACGACACCACATCCTCGACGTCGATTTCGAATAGATCATCGACATCTTCATCGGACTTAGTAGATTATGCAGCATCATCATCAACATCATCATCGTGTTCTTCTTCCCTGCATTCGCATGGATCGTTGTTCGACTTGTCAGATCTCATGTCTCACCTACCCATCAAGAAAGGACTTTCAAAGTACTATGAAGGCAAGTGCCAATCCTTTACATCTTTCTCAAAGGTCAAGAGCGTTGAAGATCTTGTAGAGAAAGAGTTACCATATAATCAAAGAAAGGCACTAAAAGCAAGCAAGAGCTATGGCGGTGGCTTGGGTTCTTATCGACCGTACACACTTCCGAAGGCCGCCATTTCTAAGGGTGACAAGGCATCAACTACCTCATCTTTTCCGAGCAGATCAAGAAGCAACTCTTTTGGTAATAATAATGCTACAATCCCCCCAATTCCAATAAGAAAGAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.47

Weight (kDa)

8.85

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
AciI	CCGC	2 cut(s)	429, 471
AclWI	GGATC	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	3 cut(s)	125, 308, 455
AgsI	TTSAA	3 cut(s)	32, 303, 362
AluBI	AGCT	2 cut(s)	84, 423
AluI	AGCT	2 cut(s)	84, 423
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	269, 497
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	101, 293
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	64
BglII	AGATCT	2 cut(s)	265, 364
BisI	GCNGC	2 cut(s)	195, 471
BlsI	GCNGC	2 cut(s)	196, 472
BmcAI	AGTACT	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmsI	GCATC	2 cut(s)	206, 503
Bpu14I	TTCGAA	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	143
BseGI	GGATG	2 cut(s)	93, 134
BseXI	GCAGC	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	152
Bsp143I	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
BspACI	CCGC	2 cut(s)	429, 471
BspANI	GGCC	1 cut(s)	470
BspHI	TCATGA	1 cut(s)	112
BspPI	GGATC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	152
BssMI	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
BssNI	GRCGYC	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	181, 480
BstF5I	GGATG	2 cut(s)	93, 134
BstKTI	GATC	7 cut(s)	48, 93, 161, 248, 268, 367, 524
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
BstMCI	CGRYCG	1 cut(s)	452
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	265, 364
BstYI	RGATCY	2 cut(s)	265, 364
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	2 cut(s)	93, 134
Cac8I	GCNNGC	1 cut(s)	415
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	124, 307, 454
CviAII	CATG	4 cut(s)	39, 113, 242, 271
CviJI	RGCY	4 cut(s)	84, 423, 435, 470
CviKI_1	RGCY	4 cut(s)	84, 423, 435, 470
CviQI	GTAC	3 cut(s)	124, 307, 454
DdeI	CTNAG	2 cut(s)	181, 480
DpnI	GATC	7 cut(s)	47, 92, 160, 247, 267, 366, 523
DpnII	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
Eco47I	GGWCC	1 cut(s)	35
FaeI	CATG	4 cut(s)	42, 116, 245, 274
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FatI	CATG	4 cut(s)	38, 112, 241, 270
Fnu4HI	GCNGC	2 cut(s)	195, 471
FokI	GGATG	2 cut(s)	100, 121
Fsp4HI	GCNGC	2 cut(s)	195, 471
GluI	GCNGC	2 cut(s)	195, 471
HaeIII	GGCC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	42, 116, 245, 274
HphI	GGTGA	2 cut(s)	269, 497
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	4 cut(s)	178, 265, 465, 516
Hpy188III	TCNNGA	5 cut(s)	94, 113, 289, 352, 525
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	2 cut(s)	145, 148
HpyAV	CCTTC	2 cut(s)	308, 460
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	8, 194, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	181, 480
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	42, 116, 245, 274
Kzo9I	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
LpnPI	CCDG	2 cut(s)	70, 245
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	2 cut(s)	206, 503
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	381, 485
MalI	GATC	7 cut(s)	47, 92, 160, 247, 267, 366, 523
MboI	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
MboII	GAAGA	7 cut(s)	29, 89, 113, 162, 216, 219, 374
MflI	RGATCY	2 cut(s)	265, 364
MluCI	AATT	1 cut(s)	567
MnlI	CCTC	2 cut(s)	148, 514
MseI	TTAA	1 cut(s)	589
MslI	CAYNNNNRTG	2 cut(s)	217, 240
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
NlaIII	CATG	4 cut(s)	42, 116, 245, 274
NmuCI	GTSAC	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	152
PagI	TCATGA	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 245
PctI	GAATGC	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	196, 472
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	265, 364
RsaI	GTAC	3 cut(s)	125, 308, 455
RsaNI	GTAC	3 cut(s)	124, 307, 454
RseI	CAYNNNNRTG	2 cut(s)	217, 240
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	2 cut(s)	195, 471
Sau3AI	GATC	7 cut(s)	45, 90, 158, 245, 265, 364, 521
Sau96I	GGNCC	1 cut(s)	35
ScaI	AGTACT	1 cut(s)	308
SetI	ASST	8 cut(s)	13, 37, 86, 146, 282, 351, 425, 506
SfaNI	GCATC	2 cut(s)	206, 503
SfcI	CTRYAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	217, 240
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	2 cut(s)	429, 471
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	7 cut(s)	44, 140, 146, 152, 164, 255, 448
TasI	AATT	1 cut(s)	567
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	114, 162, 327
VpaK11BI	GGWCC	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.