Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

4056894 .. 4059097

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGTGAAAGTAGTGAAGAACAAATGCTTCACGCTCCATGCTTGATCACACAATATGATAGCTACACAAAAGCACGGGAAGATAGCTGCGTGATCATGAAAGGACATGATGATGATGGTGATGATGACGATAATGGGTATGCGTACGACACCACATCATCCATATCGGTTTCCGATCGATCGACATCTTCTTTGGAGTTGGTAGATGATGCATCTTCATCAACAACAACATCATCATCATCATGTTCTTCTTCCTTCAATTCTCATGGATCTTTGCATGACTTGTCAGATCTCATGGCCCAGCTACCCATCAAAAGAGGACTTTCAAAGTATTTTGAAGGCAAGTGTCAGTCATTTACATCATTATCAAAGGTCAAGAGCATTGAAGATCTTGCAAAGAAAGAGAGTCCTTACAATCAAAGAAAAGCACTAAAACAAAGTAAGAGCTATGGAGGTGGCTTGGGTAGCTACAGATCCTACACACTTCCTAAGGCCACCATTTCTAAGATTAAGAAGACCTCATCAGCTTCAAGGGCTTCTTATTTGTCATCTGATAATTTATCTTTTTCAAGTAGAACAAGAGGCGGCTCTTTTGGTAGTACTACGCTCCCCCCAATTCCTGTAAGAAAGAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

22.98

Weight (kDa)

8.24

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	2 cut(s)	277, 468
AcsI	RAATTY	1 cut(s)	632
AfaI	GTAC	2 cut(s)	146, 601
AgsI	TTSAA	6 cut(s)	259, 327, 338, 386, 531, 570
AluBI	AGCT	6 cut(s)	63, 87, 304, 447, 468, 527
AluI	AGCT	6 cut(s)	63, 87, 304, 447, 468, 527
AlwI	GGATC	2 cut(s)	277, 468
AoxI	GGCC	2 cut(s)	297, 492
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	632
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	17, 131
AxyI	CCTNAGG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	110, 317
BclI	TGATCA	2 cut(s)	45, 93
BfmI	CTRYAG	1 cut(s)	469
BglII	AGATCT	2 cut(s)	289, 388
BisI	GCNGC	2 cut(s)	88, 586
BlsI	GCNGC	2 cut(s)	89, 587
BmcAI	AGTACT	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	2 cut(s)	199, 221
BpiI	GAAGAC	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	178
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	300
Bsh1285I	CGRYCG	2 cut(s)	178, 182
BshFI	GGCC	2 cut(s)	299, 494
BshVI	ATCGAT	1 cut(s)	178
BsiEI	CGRYCG	2 cut(s)	178, 182
BsiWI	CGTACG	1 cut(s)	144
BsnI	GGCC	2 cut(s)	299, 494
Bsp143I	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	2 cut(s)	299, 494
BspDI	ATCGAT	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	96
BspPI	GGATC	2 cut(s)	277, 468
BssMI	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
BstDEI	CTNAG	2 cut(s)	489, 504
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	8 cut(s)	48, 96, 178, 182, 272, 292, 391, 476
BstMBI	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
BstMCI	CGRYCG	2 cut(s)	178, 182
BstMWI	GCNNNNNNNGC	2 cut(s)	465, 533
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	4 cut(s)	269, 289, 388, 473
BstYI	RGATCY	4 cut(s)	269, 289, 388, 473
Bsu15I	ATCGAT	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	299, 494
BsuTUI	ATCGAT	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	158
CciI	TCATGA	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	145, 600
CviAII	CATG	7 cut(s)	39, 97, 107, 243, 266, 278, 295
CviQI	GTAC	2 cut(s)	145, 600
DdeI	CTNAG	2 cut(s)	489, 504
DpnI	GATC	8 cut(s)	47, 95, 177, 181, 271, 291, 390, 475
DpnII	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
Eco81I	CCTNAGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	7 cut(s)	42, 100, 110, 246, 269, 281, 298
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FatI	CATG	7 cut(s)	38, 96, 106, 242, 265, 277, 294
FbaI	TGATCA	2 cut(s)	45, 93
Fnu4HI	GCNGC	2 cut(s)	88, 586
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	88, 586
GluI	GCNGC	2 cut(s)	88, 586
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	299, 494
Hin1II	CATG	7 cut(s)	42, 100, 110, 246, 269, 281, 298
HinfI	GANTC	1 cut(s)	406
HphI	GGTGA	2 cut(s)	17, 131
Hpy188I	TCNGA	3 cut(s)	175, 289, 553
Hpy188III	TCNNGA	2 cut(s)	97, 376
HpyAV	CCTTC	2 cut(s)	265, 332
HpyCH4V	TGCA	3 cut(s)	212, 277, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	465, 533
HpyF3I	CTNAG	2 cut(s)	489, 504
Hsp92II	CATG	7 cut(s)	42, 100, 110, 246, 269, 281, 298
Ksp22I	TGATCA	2 cut(s)	45, 93
Kzo9I	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
LmnI	GCTCC	2 cut(s)	40, 612
LpnPI	CCDG	2 cut(s)	314, 633
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	199, 221
MalI	GATC	8 cut(s)	47, 95, 177, 181, 271, 291, 390, 475
MboI	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
MboII	GAAGA	8 cut(s)	29, 92, 180, 207, 240, 243, 398, 526
MflI	RGATCY	4 cut(s)	269, 289, 388, 473
MluCI	AATT	4 cut(s)	259, 556, 615, 632
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	311, 446, 529, 575
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	2 cut(s)	510, 637
MslI	CAYNNNNRTG	2 cut(s)	111, 241
MwoI	GCNNNNNNNGC	2 cut(s)	465, 533
NdeII	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
NlaIII	CATG	7 cut(s)	42, 100, 110, 246, 269, 281, 298
NsiI	ATGCAT	1 cut(s)	214
PagI	TCATGA	1 cut(s)	96
Pfl23II	CGTACG	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	89, 587
Ple19I	CGATCG	2 cut(s)	178, 182
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	300
PspLI	CGTACG	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	4 cut(s)	269, 289, 388, 473
PvuI	CGATCG	2 cut(s)	178, 182
RsaI	GTAC	2 cut(s)	146, 601
RsaNI	GTAC	2 cut(s)	145, 600
RseI	CAYNNNNRTG	2 cut(s)	111, 241
SaqAI	TTAA	2 cut(s)	510, 637
SatI	GCNGC	2 cut(s)	88, 586
Sau3AI	GATC	8 cut(s)	45, 93, 175, 179, 269, 289, 388, 473
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	1 cut(s)	415
SetI	ASST	9 cut(s)	65, 89, 306, 375, 449, 457, 470, 521, 529
SfaNI	GCATC	2 cut(s)	199, 221
SfcI	CTRYAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	2 cut(s)	111, 241
Sse9I	AATT	4 cut(s)	259, 556, 615, 632
SsiI	CCGC	1 cut(s)	585
TaqI	TCGA	2 cut(s)	178, 182
TasI	AATT	4 cut(s)	259, 556, 615, 632
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	588
Tru1I	TTAA	2 cut(s)	510, 637
Tru9I	TTAA	2 cut(s)	510, 637
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	113, 207
XapI	RAATTY	1 cut(s)	632
ZrmI	AGTACT	1 cut(s)	601
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.