Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

12549544 .. 12550192

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGTCGTCGTGAAGGAGAAATGAGGGCTTCTGGGGGTCAAAATAGAGAAGAAAATCATGCTCATCAAGTTGGAAAGGAATTTTGGGTTTTCAACGAAGAACACGAAGAAGTTATTTGTGATGACTCAAGATCTTTTGAATCTTCTTCCATGGAGAATTCTATGAGCTCAACGGAATCATCATCTTCATCTGACTTGGTGGAGGATGCTTCTTCATCTTCTTCAACATCGTCGTCGAATGGGCCGCTTTACGAACTATCTGACCTAATGATGCATCTTCCTATCAAGAGAGGTTTATCAAAATGTTATGAAGGAAAGTCACAATCTTTCACAACCCTAGCAAGTGTGACGACCTTAGAGGACCTTGCAAAAAGGGTAGCACCTTGTAGGAAGAGAATAAAGGCATGCAAGAGCTTTGGTGGTGGGTTTGATGGTCACCAATCACCGTATCTTTCTCCAAAAGCTAATATTTCAAAGAAAGCTTCAAGAGGAGGAGGATCTTTCTTGTATTCCCTTAGTAACAGAGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.31

Weight (kDa)

6.96

Isoelectric Point (pI)

68.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	80, 157
AgsI	TTSAA	5 cut(s)	94, 140, 225, 474, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	4 cut(s)	168, 414, 464, 482
AluI	AGCT	4 cut(s)	168, 414, 464, 482
Alw21I	GWGCWC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	80, 157
AspS9I	GGNCC	2 cut(s)	242, 361
AsuHPI	GGTGA	2 cut(s)	428, 435
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	170
BccI	CCATC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	338
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	242, 361
BmsI	GCATC	3 cut(s)	196, 261, 283
BpuEI	CTTGAG	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	504, 507
BshFI	GGCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	131, 497
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	131, 497
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	355, 515
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	134, 500
BstMBI	GATC	2 cut(s)	131, 497
BstNSI	RCATGY	1 cut(s)	408
BstPI	GGTNACC	1 cut(s)	434
BstX2I	RGATCY	2 cut(s)	131, 497
BstYI	RGATCY	2 cut(s)	131, 497
BsuRI	GGCC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	242, 361
CviAII	CATG	3 cut(s)	59, 151, 405
CviJI	RGCY	6 cut(s)	29, 168, 244, 414, 464, 482
CviKI_1	RGCY	6 cut(s)	29, 168, 244, 414, 464, 482
DdeI	CTNAG	2 cut(s)	355, 515
DpnI	GATC	2 cut(s)	133, 499
DpnII	GATC	2 cut(s)	131, 497
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	62, 154, 408
FaiI	YATR	5 cut(s)	60, 152, 164, 309, 406
FatI	CATG	3 cut(s)	58, 150, 404
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	62, 154, 408
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	3 cut(s)	125, 140, 176
HphI	GGTGA	2 cut(s)	428, 435
Hpy188I	TCNGA	2 cut(s)	193, 262
Hpy188III	TCNNGA	4 cut(s)	11, 129, 286, 486
Hpy99I	CGWCG	3 cut(s)	12, 235, 238
HpyAV	CCTTC	2 cut(s)	8, 305
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	274, 368, 408
HpyF3I	CTNAG	2 cut(s)	355, 515
Hsp92II	CATG	3 cut(s)	62, 154, 408
Kzo9I	GATC	2 cut(s)	131, 497
LpnPI	CCDG	1 cut(s)	18
LweI	GCATC	3 cut(s)	196, 261, 283
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	4 cut(s)	318, 346, 434, 518
MalI	GATC	2 cut(s)	133, 499
MboI	GATC	2 cut(s)	131, 497
MflI	RGATCY	2 cut(s)	131, 497
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	2 cut(s)	80, 157
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	8 cut(s)	18, 196, 284, 352, 482, 485, 488, 518
Mph1103I	ATGCAT	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	131, 497
NlaIII	CATG	3 cut(s)	62, 154, 408
NmuCI	GTSAC	3 cut(s)	318, 346, 434
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	140, 176
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	434
PspPI	GGNCC	2 cut(s)	242, 361
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	131, 497
SacI	GAGCTC	1 cut(s)	170
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	131, 497
Sau96I	GGNCC	2 cut(s)	242, 361
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	9 cut(s)	170, 267, 295, 356, 366, 385, 416, 466, 484
SfaNI	GCATC	3 cut(s)	196, 261, 283
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	2 cut(s)	80, 157
SsiI	CCGC	1 cut(s)	245
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	80, 157
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	140, 176
TseFI	GTSAC	3 cut(s)	318, 346, 434
Tsp45I	GTSAC	3 cut(s)	318, 346, 434
TspDTI	ATGAA	3 cut(s)	177, 204, 324
TspGWI	ACGGA	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	80, 157
XceI	RCATGY	1 cut(s)	408
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.