Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

60175198 .. 60176055

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG426900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTGAAGGTACTGGAAAACAAATGGTTGAGGGTGCATACTCGATCAGCCAATATGATAACTACGCGAAAAGGGAAGATAGTTGGGAGATCGTGGAAGGAGATGACGACCATGATCGTGCTGATATGTCCGACACCACTTCGACGACATCGAATCGATCTACATATTCATCAGACTTTGTGGATGATGCATCTTCATCGGCATCGTCCTCGTGTTCTTCTTCCTTGCGTTCTGGTGGATCTCTGTACGACTTGTCAGATCTCATGGCCCAGTTGCCCATCAAGAGAGGGCTTTCTAAGTATTTTCAAGGCAAGAGTCAGTCTTTTACATTTTTATCAAAAGTGAATAGTATTGAAGATCTTGCAAAGAAAGAGACTCCGTATCAGAGATCAAAAGCACTAAAATCATGCAAGAGCTATGGTGGTGGCTTAGGTACCCAAAGATCATACACTCTAATTCCTAAGGCCACCATATCTAAAGTCAAGAAGGCCTCGAGAGGTCCCTTGTCATCTGCATCTCTTTCCAGTAGAAGAGGCACCTCTTTAGGTATTATTAACAATAATGTCCCTACAGTTTCTGTAACGAAGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.34

Weight (kDa)

9.22

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	2 cut(s)	434, 536
AccII	CGCG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	247
AfaI	GTAC	3 cut(s)	13, 248, 436
AgsI	TTSAA	2 cut(s)	308, 356
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	267, 465, 489
Asp718I	GGTACC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	268, 500
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	462
BanI	GGYRCC	2 cut(s)	434, 536
BauI	CACGAG	1 cut(s)	211
BccI	CCATC	1 cut(s)	287
BcgI	CGANNNNNNTGC	4 cut(s)	180, 192, 214, 226
BcoDI	GTCTC	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	570
BglII	AGATCT	2 cut(s)	259, 358
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	268, 500
BmiI	GGNNCC	3 cut(s)	436, 502, 538
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	4 cut(s)	178, 200, 212, 524
BmuI	ACTGGG	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	157
Bse1I	ACTGG	3 cut(s)	19, 271, 525
Bse21I	CCTNAGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	157
BseGI	GGATG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	19, 271, 525
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	3 cut(s)	269, 467, 491
BshNI	GGYRCC	2 cut(s)	434, 536
BshVI	ATCGAT	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	493
BslFI	GGGAC	2 cut(s)	486, 551
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	486, 551
BsnI	GGCC	3 cut(s)	269, 467, 491
BsoBI	CYCGRG	1 cut(s)	493
Bsp143I	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
BspANI	GGCC	3 cut(s)	269, 467, 491
BspDI	ATCGAT	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	436, 502, 538
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	2 cut(s)	434, 536
BsrI	ACTGG	3 cut(s)	19, 271, 525
BssMI	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
BssSI	CACGAG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	297, 430, 462
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	9 cut(s)	48, 93, 118, 161, 242, 262, 361, 392, 446
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	68
BstX2I	RGATCY	3 cut(s)	239, 259, 358
BstYI	RGATCY	3 cut(s)	239, 259, 358
Bsu15I	ATCGAT	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	269, 467, 491
BsuTUI	ATCGAT	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	268, 500
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	12, 247, 435
CviAII	CATG	3 cut(s)	113, 265, 408
CviJI	RGCY	7 cut(s)	51, 269, 292, 417, 429, 467, 491
CviKI_1	RGCY	7 cut(s)	51, 269, 292, 417, 429, 467, 491
CviQI	GTAC	3 cut(s)	12, 247, 435
DdeI	CTNAG	3 cut(s)	297, 430, 462
DpnI	GATC	9 cut(s)	47, 92, 117, 160, 241, 261, 360, 391, 445
DpnII	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco147I	AGGCCT	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	3 cut(s)	116, 268, 411
FaqI	GGGAC	2 cut(s)	486, 551
FatI	CATG	3 cut(s)	112, 264, 407
FokI	GGATG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	269, 467, 491
Hin1II	CATG	3 cut(s)	116, 268, 411
HinfI	GANTC	3 cut(s)	154, 316, 376
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	133, 175, 259, 387
Hpy188III	TCNNGA	3 cut(s)	283, 484, 495
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	92, 481
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4V	TGCA	5 cut(s)	38, 191, 365, 411, 515
HpyF3I	CTNAG	3 cut(s)	297, 430, 462
Hsp92II	CATG	3 cut(s)	116, 268, 411
KpnI	GGTACC	1 cut(s)	438
Kzo9I	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
LpnPI	CCDG	3 cut(s)	219, 284, 538
LweI	GCATC	4 cut(s)	178, 200, 212, 524
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	9 cut(s)	47, 92, 117, 160, 241, 261, 360, 391, 445
MboI	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
MboII	GAAGA	6 cut(s)	89, 186, 210, 213, 368, 543
MflI	RGATCY	3 cut(s)	239, 259, 358
MluCI	AATT	1 cut(s)	456
MlyI	GAGTC	2 cut(s)	325, 370
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	25, 220, 281, 491, 502, 527, 550
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	555, 595
MslI	CAYNNNNRTG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	68
NdeII	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
NlaIII	CATG	3 cut(s)	116, 268, 411
NlaIV	GGNNCC	3 cut(s)	436, 502, 538
NsiI	ATGCAT	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	324, 370
PpsI	GAGTC	2 cut(s)	324, 370
PpuMI	RGGWCCY	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	436, 502, 538
PspPI	GGNCC	2 cut(s)	268, 500
PspPPI	RGGWCCY	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	3 cut(s)	239, 259, 358
RsaI	GTAC	3 cut(s)	13, 248, 436
RsaNI	GTAC	3 cut(s)	12, 247, 435
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	555, 595
Sau3AI	GATC	9 cut(s)	45, 90, 115, 158, 239, 259, 358, 389, 443
Sau96I	GGNCC	2 cut(s)	268, 500
SchI	GAGTC	2 cut(s)	325, 370
SetI	ASST	6 cut(s)	13, 419, 436, 502, 542, 550
SfaNI	GCATC	4 cut(s)	178, 200, 212, 524
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	1 cut(s)	456
SseBI	AGGCCT	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	574
TaqI	TCGA	5 cut(s)	44, 143, 152, 157, 494
TasI	AATT	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	555, 595
Tru9I	TTAA	2 cut(s)	555, 595
TspDTI	ATGAA	2 cut(s)	159, 186
TspGWI	ACGGA	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.