Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

3572029 .. 3572665

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTCGTCGTGCAGAAGAAAAGAGAGTTTCTGGGAATCGAAATAAAGAAGAAAATCATGCTCACCAAGTCAAAAAGGAATGTTGGGTTTTCGAGGAAGAACATGAAGAAGATATCTGTGACTCGAGATCTGTTGAATCCTCCATGGAAAACTCTATGAGCTCCGCGGAATCATCATCTTCATCTGACTTGGTAGAAGATGCTTCTTCTTCTTCTACGACGTCGTTGTCGTCGAACGGGCCGCTCTTCGAACTATCTGACCTAATGATCCATCTTCCTATCAAGAGAGGTTTATCAAAATGTTACGAAGGAAAGTCACAATCGTTCACAACCCTAGCAAGTGCGACGAGCTTGGAGGATCTGGGAAAAAAGGTGGCACCTTACAGGAAGAAGATGAAGCCATGCAAGAGCTTTGGTGGCGCTTTTGACGGTCACAAATCACCATATCTTTCTCCAAAAGCCATTATTTCAAAGAAAACTTCGAGAGGAGAAGGATCTTTCTTGTTTTCCTTAAGTAACAGAGGAAAATTATTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.65

Weight (kDa)

8.3

Isoelectric Point (pI)

62.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	226
AatII	GACGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	1 cut(s)	167
AciI	CCGC	3 cut(s)	165, 167, 242
AclWI	GGATC	3 cut(s)	262, 366, 502
AcyI	GRCGYC	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	137, 471
AluBI	AGCT	3 cut(s)	162, 351, 411
AluI	AGCT	3 cut(s)	162, 351, 411
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	3 cut(s)	262, 366, 502
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	56, 432
AsuII	TTCGAA	1 cut(s)	249
AvaI	CYCGRG	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	511
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	378
BmsI	GCATC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	144, 165
BseDI	CCNNGG	2 cut(s)	144, 165
BseRI	GAGGAG	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	124
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	128, 267, 358, 494
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	3 cut(s)	165, 167, 242
BspANI	GGCC	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	3 cut(s)	262, 366, 502
BspQI	GCTCTTC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	376
BspTI	CTTAAG	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	144, 165
BssMI	GATC	4 cut(s)	128, 267, 358, 494
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	249
BstDSI	CCRYGG	2 cut(s)	144, 165
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	4 cut(s)	131, 270, 361, 497
BstMBI	GATC	4 cut(s)	128, 267, 358, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	167
BstX2I	RGATCY	3 cut(s)	128, 358, 494
BstYI	RGATCY	3 cut(s)	128, 358, 494
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	2 cut(s)	144, 165
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	239
Cfr42I	CCGCGG	1 cut(s)	168
CviAII	CATG	4 cut(s)	59, 104, 145, 402
CviJI	RGCY	6 cut(s)	162, 241, 351, 400, 411, 461
CviKI_1	RGCY	6 cut(s)	162, 241, 351, 400, 411, 461
DpnI	GATC	4 cut(s)	130, 269, 360, 496
DpnII	GATC	4 cut(s)	128, 267, 358, 494
DrdI	GACNNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	62, 107, 148, 405
FaiI	YATR	6 cut(s)	60, 105, 146, 158, 403, 445
FatI	CATG	4 cut(s)	58, 103, 144, 401
Fnu4HI	GCNGC	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	62, 107, 148, 405
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	4 cut(s)	37, 122, 137, 170
HphI	GGTGA	2 cut(s)	56, 432
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	187, 259
Hpy188III	TCNNGA	3 cut(s)	126, 283, 483
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	5 cut(s)	12, 223, 226, 235, 349
HpyAV	CCTTC	2 cut(s)	302, 485
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	14, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	62, 107, 148, 405
HspAI	GCGC	1 cut(s)	420
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	128, 267, 358, 494
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	18, 347, 370
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	5 cut(s)	119, 302, 315, 431, 515
MalI	GATC	4 cut(s)	130, 269, 360, 496
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	4 cut(s)	128, 267, 358, 494
MflI	RGATCY	3 cut(s)	128, 358, 494
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	88, 151, 281, 349, 479, 515
MseI	TTAA	2 cut(s)	512, 538
MspA1I	CMGCKG	1 cut(s)	167
MspCI	CTTAAG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	4 cut(s)	128, 267, 358, 494
NlaIII	CATG	4 cut(s)	62, 107, 148, 405
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	3 cut(s)	119, 315, 431
NspV	TTCGAA	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 230
PfeI	GAWTC	3 cut(s)	37, 137, 170
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	128, 358, 494
SacI	GAGCTC	1 cut(s)	164
SacII	CCGCGG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	512, 538
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	4 cut(s)	128, 267, 358, 494
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	8 cut(s)	164, 224, 264, 292, 353, 375, 382, 413
SfaNI	GCATC	1 cut(s)	190
Sfr274I	CTCGAG	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	124, 511
SmoI	CTYRAG	2 cut(s)	124, 511
Sse9I	AATT	1 cut(s)	527
SsiI	CCGC	3 cut(s)	165, 167, 242
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	6 cut(s)	40, 93, 125, 233, 249, 482
TasI	AATT	1 cut(s)	527
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	3 cut(s)	37, 137, 170
Tru1I	TTAA	2 cut(s)	512, 538
Tru9I	TTAA	2 cut(s)	512, 538
TseFI	GTSAC	3 cut(s)	119, 315, 431
Tsp45I	GTSAC	3 cut(s)	119, 315, 431
TspDTI	ATGAA	3 cut(s)	120, 171, 410
Vha464I	CTTAAG	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	124
XspI	CTAG	1 cut(s)	335
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.