Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

25600009 .. 25601423

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTGAAGGTACTGGAAAACAAATGGCTCAGGGTGCATACTCGATCAGACAATATGACAACTACGCGAAAAGAGAAGAGAGTTGGGCGATCATGGAAGGAGATGATGATGACCATGATCATGATGATATGTCCGACACCACTTCGACGACATCTAATCGAACGACGTATTCATCAGACTTGGTGGATGATGCATCTTCATCGGCATCGTCTTCATGTTCTTCATCCTTGCGTTCTGGTGGATCTCTCTACGACTTGTCAGATCTCATGGCGCAGTTACCCATCAAGAGAGGGCTTTCCAAGTATTTTCAAGGCAAGAGTCAGTCTTTCACATCTTTATCAAAAGTGAATAGCATTGAAGATCTTGCAAAGAAAGAGACTCCATATAAGAGATCAAAAGCGCTAAAATCATGCAAGAGCTATGGTGGTGGCTTAGGTACCCAAAGATCATACTCTCTTATTCCCAAGGCTACGATATCTAAAGTGAAGAAAACTTCGAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.31

Weight (kDa)

8.74

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	437
AccII	CGCG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	250
AfaI	GTAC	2 cut(s)	13, 439
AfeI	AGCGCT	1 cut(s)	402
AgsI	TTSAA	2 cut(s)	311, 359
AluBI	AGCT	2 cut(s)	420, 504
AluI	AGCT	2 cut(s)	420, 504
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	402
Asp718I	GGTACC	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	274, 403
AsuHPI	GGTGA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	204
BccI	CCATC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	505
BfoI	RGCGCY	1 cut(s)	404
BglII	AGATCT	2 cut(s)	262, 361
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	3 cut(s)	181, 203, 215
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	2 cut(s)	30, 433
BsaJI	CCNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	193, 224
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	371
Bsp143I	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
BssT1I	CCWWGG	1 cut(s)	465
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	30, 433
BstF5I	GGATG	2 cut(s)	193, 224
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	2 cut(s)	274, 403
BstKTI	GATC	8 cut(s)	48, 93, 121, 245, 265, 364, 395, 449
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	242, 262, 361
BstYI	RGATCY	3 cut(s)	242, 262, 361
BtsCI	GGATG	2 cut(s)	193, 224
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	2 cut(s)	274, 403
Csp6I	GTAC	2 cut(s)	12, 438
CviAII	CATG	6 cut(s)	94, 116, 122, 216, 268, 411
CviJI	RGCY	6 cut(s)	29, 295, 420, 432, 470, 504
CviKI_1	RGCY	6 cut(s)	29, 295, 420, 432, 470, 504
CviQI	GTAC	2 cut(s)	12, 438
DdeI	CTNAG	2 cut(s)	30, 433
DpnI	GATC	8 cut(s)	47, 92, 120, 244, 264, 363, 394, 448
DpnII	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	477
Eco47III	AGCGCT	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	6 cut(s)	97, 119, 125, 219, 271, 414
FatI	CATG	6 cut(s)	93, 115, 121, 215, 267, 410
FbaI	TGATCA	1 cut(s)	118
FokI	GGATG	2 cut(s)	200, 211
FspBI	CTAG	1 cut(s)	505
GlaI	GCGC	2 cut(s)	273, 402
HaeII	RGCGCY	1 cut(s)	404
HhaI	GCGC	2 cut(s)	274, 403
Hin1II	CATG	6 cut(s)	97, 119, 125, 219, 271, 414
Hin6I	GCGC	2 cut(s)	272, 401
HinP1I	GCGC	2 cut(s)	272, 401
HinfI	GANTC	2 cut(s)	319, 379
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	50, 136, 178, 262
Hpy188III	TCNNGA	3 cut(s)	122, 286, 498
Hpy99I	CGWCG	2 cut(s)	151, 169
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	38, 194, 368, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	30, 433
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	6 cut(s)	97, 119, 125, 219, 271, 414
HspAI	GCGC	2 cut(s)	272, 401
KpnI	GGTACC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
LpnPI	CCDG	2 cut(s)	17, 222
LweI	GCATC	3 cut(s)	181, 203, 215
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	8 cut(s)	47, 92, 120, 244, 264, 363, 394, 448
MboI	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
MboII	GAAGA	6 cut(s)	89, 189, 204, 213, 371, 499
MflI	RGATCY	3 cut(s)	242, 262, 361
MlyI	GAGTC	2 cut(s)	328, 373
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	196
MslI	CAYNNNNRTG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
NlaIII	CATG	6 cut(s)	97, 119, 125, 219, 271, 414
NlaIV	GGNNCC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	196
PagI	TCATGA	1 cut(s)	121
PleI	GAGTC	2 cut(s)	327, 373
PpsI	GAGTC	2 cut(s)	327, 373
PspN4I	GGNNCC	1 cut(s)	439
PsuI	RGATCY	3 cut(s)	242, 262, 361
RsaI	GTAC	2 cut(s)	13, 439
RsaNI	GTAC	2 cut(s)	12, 438
RseI	CAYNNNNRTG	1 cut(s)	120
Sau3AI	GATC	8 cut(s)	45, 90, 118, 242, 262, 361, 392, 446
SchI	GAGTC	2 cut(s)	328, 373
SetI	ASST	5 cut(s)	13, 170, 422, 439, 506
SfaNI	GCATC	3 cut(s)	181, 203, 215
SmiMI	CAYNNNNRTG	1 cut(s)	120
SspMI	CTAG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	465
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	44, 146, 160, 497
TspDTI	ATGAA	4 cut(s)	162, 189, 204, 213
XspI	CTAG	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.