Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Forward (+)

18606757 .. 18607959

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1201500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTGCAGGTAGTGAAGAACAAATGCTTCAAGCTCCATGCTCGATCACAAAATATGACAACTACACAAAAAGGGAAGATAGCTGGGTGATCATGAATGAAGATGATGGTCATGATGATGATCGTGATGAGATGTACGACACCACATCCTCGACGTCGATTTCGAATAGATCATCGACATCTTCATCGGACTTAGTAGATTATGCAGCATCATCATCAACATCATCATCGTGTTCTTCCTTGCATTCGCATGGATCGTTGTTCGACTTGTCAGATCTCATAGCTCAGCTACCCATCAAGAAAGGACTTTCAAAGTACTTTGAAGGCAAGTGCCAATCCTTTACATCTTTCTCAAAGGTCAAGAGCGTTGAAGATCTTGTAAAGAAAGAGTTACCATATAATCAAAGAAAGGCACTAAAAGCAAGCAAGAGCTATGGCGGTGGCTTGGGTTCTTACCGACCGTACACACTTCCGAAGGCCGCCATTTCTAAGAGTAACAAGGCATCAACTACCTCATCTTTTCCGACCAGATCAAGAAGCAACTCTTTAGGTAATAATAATGCTACAATCCCTCCAATTCCAACAAGAAAGAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

21.75

Weight (kDa)

8.85

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AciI	CCGC	2 cut(s)	438, 480
AclWI	GGATC	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	137, 317, 464
AgsI	TTSAA	4 cut(s)	32, 312, 323, 371
AluBI	AGCT	5 cut(s)	35, 84, 284, 289, 432
AluI	AGCT	5 cut(s)	35, 84, 284, 289, 432
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	101, 302
BclI	TGATCA	1 cut(s)	90
BglII	AGATCT	2 cut(s)	274, 373
BisI	GCNGC	2 cut(s)	207, 480
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	208, 481
BmcAI	AGTACT	1 cut(s)	317
BmsI	GCATC	2 cut(s)	218, 512
Bpu1102I	GCTNAGC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bse8I	GATNNNNATC	1 cut(s)	120
BseGI	GGATG	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	479
BsiEI	CGRYCG	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	438, 480
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	2 cut(s)	93, 112
BspPI	GGATC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	164
BssMI	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
BssNI	GRCGYC	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	193, 285, 489
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	8 cut(s)	48, 93, 124, 173, 257, 277, 376, 533
BstMBI	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	274, 373
BstYI	RGATCY	2 cut(s)	274, 373
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	2 cut(s)	93, 112
Csp6I	GTAC	3 cut(s)	136, 316, 463
CviAII	CATG	4 cut(s)	39, 94, 113, 251
CviJI	RGCY	7 cut(s)	35, 84, 284, 289, 432, 444, 479
CviKI_1	RGCY	7 cut(s)	35, 84, 284, 289, 432, 444, 479
CviQI	GTAC	3 cut(s)	136, 316, 463
DdeI	CTNAG	3 cut(s)	193, 285, 489
DpnI	GATC	8 cut(s)	47, 92, 123, 172, 256, 276, 375, 532
DpnII	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
FaeI	CATG	4 cut(s)	42, 97, 116, 254
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	4 cut(s)	38, 93, 112, 250
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	207, 480
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	207, 480
GluI	GCNGC	2 cut(s)	207, 480
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	42, 97, 116, 254
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	4 cut(s)	190, 274, 474, 525
Hpy188III	TCNNGA	6 cut(s)	94, 113, 125, 298, 361, 534
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	2 cut(s)	157, 160
HpyAV	CCTTC	2 cut(s)	317, 469
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	8, 206, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	3 cut(s)	193, 285, 489
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	42, 97, 116, 254
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	70, 541
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	2 cut(s)	218, 512
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	390, 494
MalI	GATC	8 cut(s)	47, 92, 123, 172, 256, 276, 375, 532
MboI	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
MboII	GAAGA	6 cut(s)	29, 89, 113, 174, 228, 383
MflI	RGATCY	2 cut(s)	274, 373
MluCI	AATT	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	3 cut(s)	160, 523, 582
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	3 cut(s)	117, 229, 249
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
NlaIII	CATG	4 cut(s)	42, 97, 116, 254
NspV	TTCGAA	1 cut(s)	164
PagI	TCATGA	2 cut(s)	93, 112
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 254
PctI	GAATGC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	208, 481
PspFI	CCCAGC	1 cut(s)	84
PsuI	RGATCY	2 cut(s)	274, 373
RsaI	GTAC	3 cut(s)	137, 317, 464
RsaNI	GTAC	3 cut(s)	136, 316, 463
RseI	CAYNNNNRTG	3 cut(s)	117, 229, 249
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	2 cut(s)	207, 480
Sau3AI	GATC	8 cut(s)	45, 90, 121, 170, 254, 274, 373, 530
ScaI	AGTACT	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	218, 512
SfuI	TTCGAA	1 cut(s)	164
SmiMI	CAYNNNNRTG	3 cut(s)	117, 229, 249
Sse9I	AATT	1 cut(s)	576
SsiI	CCGC	2 cut(s)	438, 480
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	6 cut(s)	44, 152, 158, 164, 176, 264
TasI	AATT	1 cut(s)	576
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	110, 114, 174
ZraI	GACGTC	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.