Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

5172882 .. 5174359

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG068200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTCTTCAAGAAGCTAAGGTTGGTGGTGATCAAAATAGGAAAGAAAGCGAGATTGGTTATCAGGGTTTTGAAGATAACTGGGTTATAAAGGAAGACCACCCTGAAGATATTTGTGATTCAAGATCCATGGACTCCATGGAATCGTCTTCGTCTTCGTTTTCATCAGATTTGGTCGAGGATGTATCTTCTTCTTCTTCATCATCTTCAAATGGACCTCTTTATGAATTATCTGAGCTCATGATTCATCTTCCTATAAGGAGAGGTTTATCGAAGTATTATCAAGGAAAGTCGCAATCTTTCACATCTCTGGGAGGTGTGAAGAGCTTAGAGGATCTTGCAAAGAAGGTGGCAGCACCCTATAGAAGGAAAATGAAGCCATGCAAGAGCTATGGAGGTGGTTTAGATCATGGTCACAAATCTTTTAGTACAAGTCCGAAAGCCATTATCTCAAAGAAAGCTATTTCAAAGGGTTCTTTCTTATATTCCATAAGTAGTAATACCAAGAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.75

Weight (kDa)

8.95

Isoelectric Point (pI)

61.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AclWI	GGATC	2 cut(s)	120, 342
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	5 cut(s)	11, 74, 123, 210, 468
AjuI	GAANNNNNNNTTGG	3 cut(s)	38, 39, 71
AluBI	AGCT	5 cut(s)	17, 238, 327, 390, 461
AluI	AGCT	5 cut(s)	17, 238, 327, 390, 461
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	120, 342
ApeKI	GCWGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	3 cut(s)	102, 141, 147
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	3 cut(s)	102, 141, 147
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	129, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	129, 138
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	31, 125, 334, 406
Bsp19I	CCATGG	2 cut(s)	129, 138
BspCNI	CTCAG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	240
BspPI	GGATC	2 cut(s)	120, 342
BspQI	GCTCTTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	129, 138
BssMI	GATC	4 cut(s)	31, 125, 334, 406
BssT1I	CCWWGG	2 cut(s)	129, 138
Bst6I	CTCTTC	1 cut(s)	317
BstDEI	CTNAG	3 cut(s)	18, 234, 328
BstDSI	CCRYGG	2 cut(s)	129, 138
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	34, 128, 337, 409
BstMBI	GATC	4 cut(s)	31, 125, 334, 406
BstSFI	CTRYAG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	3 cut(s)	102, 141, 147
BstX2I	RGATCY	2 cut(s)	125, 334
BstYI	RGATCY	2 cut(s)	125, 334
BtgI	CCRYGG	2 cut(s)	129, 138
BtsCI	GGATG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	429
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	5 cut(s)	130, 139, 241, 381, 410
CviJI	RGCY	7 cut(s)	17, 238, 327, 379, 390, 443, 461
CviKI_1	RGCY	7 cut(s)	17, 238, 327, 379, 390, 443, 461
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	3 cut(s)	18, 234, 328
DpnI	GATC	4 cut(s)	33, 127, 336, 408
DpnII	GATC	4 cut(s)	31, 125, 334, 406
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	129, 138
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	129, 138
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	129, 138
FaeI	CATG	5 cut(s)	133, 142, 244, 384, 413
FatI	CATG	5 cut(s)	129, 138, 240, 380, 409
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	354
Hin1II	CATG	5 cut(s)	133, 142, 244, 384, 413
HinfI	GANTC	4 cut(s)	119, 134, 143, 244
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	169, 235, 438
Hpy188III	TCNNGA	3 cut(s)	11, 123, 241
HpyAV	CCTTC	2 cut(s)	340, 360
HpyCH4V	TGCA	2 cut(s)	341, 384
HpyF3I	CTNAG	3 cut(s)	18, 234, 328
Hsp92II	CATG	5 cut(s)	133, 142, 244, 384, 413
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 125, 334, 406
LguI	GCTCTTC	1 cut(s)	317
LpnPI	CCDG	4 cut(s)	50, 67, 117, 296
Lsp1109I	GCAGC	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	4 cut(s)	33, 127, 336, 408
MboI	GATC	4 cut(s)	31, 125, 334, 406
MflI	RGATCY	2 cut(s)	125, 334
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	172, 228, 257, 308, 325, 389, 501
NcoI	CCATGG	2 cut(s)	129, 138
NdeII	GATC	4 cut(s)	31, 125, 334, 406
NlaIII	CATG	5 cut(s)	133, 142, 244, 384, 413
NmuCI	GTSAC	1 cut(s)	413
PagI	TCATGA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	119, 143, 244
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	125, 334
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	317
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	4 cut(s)	31, 125, 334, 406
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	129, 138
TaqI	TCGA	2 cut(s)	177, 272
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	119, 143, 244
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	5 cut(s)	153, 189, 236, 240, 389
VpaK11BI	GGWCC	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.