Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013552.1

Orthogroup ID

OG0003411

Physical Location & Seq

Genomic Coordinates Reverse (-)

15904 .. 16550

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013552.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgggtcttcaagaagctaaggttggtggtgatcaaaataggaaagaaagcgagattggttatcagggttttgaagataactgggttataaaggaagactaccctgaagatatttgtgattcaagatccatggactccatggaatcgtcttcgtcttcatcttcatcagatttggtcgaggatgtatcttcttcttcttcttcttcttcttcatcttcaaatggacctctttatgaattatctgagctcatgattcatcttcctataaggagaggtttatcgaagtattatcaaggaaagtcgcaatctttcacatctctgggaggtgtgaagagcttagaggatcttgcaaagaaggtggcagcaccctatagaaggaaaatgaagccatgcaagagctatggaggtggtttagatcatggtcacaaatcttttagtacaagtccgaaagccattatctcaaagaaagctatttcaaagggttctttcttatattccataagtagtaataccaagaggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

8.94

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56550
fragaria_vesca	FvH4_1g06410 FvH4_6g32530
malus_domestica	MD02G1067400.v1.1 MD09G1201500.v1.1 MD10G1246900.v1.1 MD15G1198100.v1.1 MD15G1199200.v1.1 MD17G1181600.v1.1
prunus_persica	Prupe.3G057300_v2.0.a1 Prupe.3G057300_v2.0.a1 Prupe.7G218000_v2.0.a1
pyrus_communis	pycom02g05340 pycom09g11820 pycom12654g00170 pycom15g17670 pycom17g19120
rosa_chinensis	RchiOBHm_Chr2g0092151 RchiOBHm_Chr2g0140911
rosa_laevigata	RLG00000016279 RLG00000019901
rosa_multiflora	Rmu_sc0003848.1_g000009 Rmu_sc0013552.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104390 Rroxscaffold_2G00149430
rosa_rugosa	Rorug02G0023200 Rorug02G0365600
rosa_samantha	Rh2AG068900 Rh2AG417000 Rh2BG068200 Rh2BG426900 Rh2CG069400 Rh2CG403300 Rh2DG436500
rosa_wichuraiana	Rw2G006340 Rw2G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AclWI	GGATC	2 cut(s)	120, 351
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	11, 74, 123, 219, 477
AjuI	GAANNNNNNNTTGG	3 cut(s)	38, 39, 71
AluBI	AGCT	5 cut(s)	17, 247, 336, 399, 470
AluI	AGCT	5 cut(s)	17, 247, 336, 399, 470
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	120, 351
ApeKI	GCWGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	3 cut(s)	102, 141, 147
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	370
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	3 cut(s)	102, 141, 147
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	129, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	129, 138
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	31, 125, 343, 415
Bsp19I	CCATGG	2 cut(s)	129, 138
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	249
BspPI	GGATC	2 cut(s)	120, 351
BspQI	GCTCTTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	129, 138
BssMI	GATC	4 cut(s)	31, 125, 343, 415
BssT1I	CCWWGG	2 cut(s)	129, 138
Bst6I	CTCTTC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	18, 243, 337
BstDSI	CCRYGG	2 cut(s)	129, 138
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	34, 128, 346, 418
BstMBI	GATC	4 cut(s)	31, 125, 343, 415
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	3 cut(s)	102, 141, 147
BstX2I	RGATCY	2 cut(s)	125, 343
BstYI	RGATCY	2 cut(s)	125, 343
BtgI	CCRYGG	2 cut(s)	129, 138
BtsCI	GGATG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	438
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	5 cut(s)	130, 139, 250, 390, 419
CviJI	RGCY	7 cut(s)	17, 247, 336, 388, 399, 452, 470
CviKI_1	RGCY	7 cut(s)	17, 247, 336, 388, 399, 452, 470
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	3 cut(s)	18, 243, 337
DpnI	GATC	4 cut(s)	33, 127, 345, 417
DpnII	GATC	4 cut(s)	31, 125, 343, 415
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	129, 138
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	129, 138
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	129, 138
FaeI	CATG	5 cut(s)	133, 142, 253, 393, 422
FatI	CATG	5 cut(s)	129, 138, 249, 389, 418
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	133, 142, 253, 393, 422
HinfI	GANTC	4 cut(s)	119, 134, 143, 253
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	169, 244, 447
Hpy188III	TCNNGA	3 cut(s)	11, 123, 250
HpyAV	CCTTC	2 cut(s)	349, 369
HpyCH4V	TGCA	2 cut(s)	350, 393
HpyF3I	CTNAG	3 cut(s)	18, 243, 337
Hsp92II	CATG	5 cut(s)	133, 142, 253, 393, 422
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 125, 343, 415
LguI	GCTCTTC	1 cut(s)	326
LpnPI	CCDG	4 cut(s)	50, 67, 117, 305
Lsp1109I	GCAGC	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	33, 127, 345, 417
MboI	GATC	4 cut(s)	31, 125, 343, 415
MflI	RGATCY	2 cut(s)	125, 343
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	172, 237, 266, 317, 334, 398, 510
NcoI	CCATGG	2 cut(s)	129, 138
NdeII	GATC	4 cut(s)	31, 125, 343, 415
NlaIII	CATG	5 cut(s)	133, 142, 253, 393, 422
NmuCI	GTSAC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	119, 143, 253
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	125, 343
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	4 cut(s)	31, 125, 343, 415
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	370
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	129, 138
TaqI	TCGA	2 cut(s)	177, 281
TasI	AATT	1 cut(s)	236
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	3 cut(s)	119, 143, 253
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	6 cut(s)	147, 153, 201, 245, 249, 398
VpaK11BI	GGWCC	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.