Rmu_sc0003507.1_g000008

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003507.1
OG0016539
Physical Location & Seq
Forward (+)
64025 .. 65538
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1185 bp
atgacagacagagtctacccatctgccaagcccgccaccaacggcgcggcagccccaaacccagccttccccgctacgaaagcgcagctctacagcaacgcgcgccctgcctaccgccctcaaccccaccgccaccgccgcagccgcagccgctgctgctcttgctgcctctggatcattttccttctcatcctccaaatcttcattggagccatatgcggcgctgttttctacctcatatacaagccccaacgcccgaccttctccgtcacctccctcaagctctccaccttcaacatcacctcctccaaccagctcacctcccgttttgacatcaacgtcaccggccggaaccccaacaagaaactcgtcttcttctacaaccccatcgccatttccatcctctcaaaagaagatatagacgtcgacagagtctacccatctgccaagcccgccaccaacggcgcggcagccccaaacccagccttccccgctacgaaagcgcagctctacagcaacgcgcgccctgcctaccgccctcaaccccaccgccaccgccgcagccgcagccgctgctgctcttgctgcctctggatcattttccttctcatcctccaaatcttcattggagccatatgcggcgctgttttctacctcatatacaagccccaacgcccgaccttctccgtcacctccctcaagctctccaccttcaacatcacctcctccaaccagctcacctcccgttttgacatcaacgtcaccggccggaaccccaacaagaaactcgtcttcttctacaaccccatcgccatttccatcctctcaaaagaagatatagacgtcggtgacggatccataccggctttcactcacggaaagaagaacacgactctcctgaaggctaggattacaagcagcggcaaaccactcgagagcagtgacgtcaccacgttgaaggctgagatgaagagcaaagctgggttgggactgaaggtgaggttggacaccaaagtgagagtgaaagttttcggggtgaagactccaaaaatcggaattagggttcattgcgaagggattaaggttacttctcttcctactgcgaaagctgctgcgaaggcttcgactagtaatgccaagtgcaaggttgatgttagagtcaagatctggaaatggactgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

394

Amino Acids

43.65

Weight (kDa)

10.3

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 255 - 357 1.5e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 338, 758
AatII GACGTC 3 cut(s) 426, 846, 948
AccI GTMKAC 3 cut(s) 15, 426, 435
AccII CGCG 6 cut(s) 47, 101, 103, 467, 521, 523
AclWI GGATC 4 cut(s) 182, 602, 849, 862
AcoI YGGCCR 2 cut(s) 346, 766
AcuI CTGAAG 2 cut(s) 920, 1013
AcyI GRCGYC 3 cut(s) 423, 843, 945
AfiI CCNNNNNNNGG 1 cut(s) 1052
AgsI TTSAA 3 cut(s) 295, 715, 958
AhlI ACTAGT 1 cut(s) 1127
AjuI GAANNNNNNNTTGG 2 cut(s) 986, 1018
AleI CACNNNNGTG 1 cut(s) 1013
AloI GAACNNNNNNTCC 2 cut(s) 1047, 1079
AluBI AGCT 8 cut(s) 88, 283, 316, 508, 703, 736, 980, 1109
AluI AGCT 8 cut(s) 88, 283, 316, 508, 703, 736, 980, 1109
AlwI GGATC 4 cut(s) 182, 602, 849, 862
AlwNI CAGNNNCTG 2 cut(s) 153, 573
Ama87I CYCGRG 1 cut(s) 932
AoxI GGCC 2 cut(s) 346, 766
Asp700I GAANNNNTTC 1 cut(s) 1028
AvaI CYCGRG 1 cut(s) 932
BamHI GGATCC 1 cut(s) 854
BbsI GAAGAC 3 cut(s) 364, 784, 1046
BccI CCATC 6 cut(s) 28, 395, 407, 448, 815, 827
BceAI ACGGC 2 cut(s) 58, 478
BcgI CGANNNNNNTGC 2 cut(s) 913, 947
BcuI ACTAGT 1 cut(s) 1127
BfaI CTAG 2 cut(s) 906, 1128
BfmI CTRYAG 2 cut(s) 91, 511
BfoI RGCGCY 2 cut(s) 225, 645
BglII AGATCT 1 cut(s) 1164
BmeT110I CYCGRG 1 cut(s) 932
BmiI GGNNCC 5 cut(s) 211, 353, 631, 773, 856
BpiI GAAGAC 3 cut(s) 364, 784, 1046
BpuEI CTTGAG 2 cut(s) 263, 683
BsaHI GRCGYC 3 cut(s) 423, 843, 945
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 707, 737
Bsc4I CCNNNNNNNGG 1 cut(s) 1052
Bse118I RCCGGY 3 cut(s) 344, 764, 862
Bse3DI GCAATG 1 cut(s) 1066
BseGI GGATG 4 cut(s) 189, 399, 609, 819
BseLI CCNNNNNNNGG 1 cut(s) 1052
BseMI GCAATG 1 cut(s) 1066
BseMII CTCAG 1 cut(s) 954
BsePI GCGCGC 2 cut(s) 101, 521
BseRI GAGGAG 2 cut(s) 295, 715
BseX3I CGGCCG 2 cut(s) 346, 766
BseYI CCCAGC 3 cut(s) 61, 481, 980
Bsh1236I CGCG 6 cut(s) 47, 101, 103, 467, 521, 523
Bsh1285I CGRYCG 2 cut(s) 349, 769
BshFI GGCC 2 cut(s) 348, 768
BsiEI CGRYCG 2 cut(s) 349, 769
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 5 cut(s) 345, 349, 765, 769, 863
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 1 cut(s) 1052
BsmFI GGGAC 1 cut(s) 1002
BsnI GGCC 2 cut(s) 348, 768
BsoBI CYCGRG 1 cut(s) 932
Bsp143I GATC 4 cut(s) 174, 594, 854, 1164
BspANI GGCC 2 cut(s) 348, 768
BspCNI CTCAG 1 cut(s) 955
BspFNI CGCG 6 cut(s) 47, 101, 103, 467, 521, 523
BspLI GGNNCC 5 cut(s) 211, 353, 631, 773, 856
BspPI GGATC 4 cut(s) 182, 602, 849, 862
BspQI GCTCTTC 1 cut(s) 965
BsrDI GCAATG 1 cut(s) 1066
BsrFI RCCGGY 3 cut(s) 344, 764, 862
BssAI RCCGGY 3 cut(s) 344, 764, 862
BssHII GCGCGC 2 cut(s) 101, 521
BssMI GATC 4 cut(s) 174, 594, 854, 1164
BssNI GRCGYC 3 cut(s) 423, 843, 945
Bst4CI ACNGT 1 cut(s) 1180
Bst6I CTCTTC 2 cut(s) 965, 1098
BstACI GRCGYC 3 cut(s) 423, 843, 945
BstAPI GCANNNNNTGC 2 cut(s) 153, 573
BstC8I GCNNGC 4 cut(s) 33, 103, 453, 523
BstDEI CTNAG 1 cut(s) 963
BstF5I GGATG 4 cut(s) 189, 399, 609, 819
BstFNI CGCG 6 cut(s) 47, 101, 103, 467, 521, 523
BstH2I RGCGCY 2 cut(s) 225, 645
BstKTI GATC 4 cut(s) 177, 597, 857, 1167
BstMBI GATC 4 cut(s) 174, 594, 854, 1164
BstMCI CGRYCG 2 cut(s) 349, 769
BstSFI CTRYAG 2 cut(s) 91, 511
BstUI CGCG 6 cut(s) 47, 101, 103, 467, 521, 523
BstV2I GAAGAC 3 cut(s) 364, 784, 1046
BstX2I RGATCY 2 cut(s) 854, 1164
BstYI RGATCY 2 cut(s) 854, 1164
BstZI CGGCCG 2 cut(s) 346, 766
BsuRI GGCC 2 cut(s) 348, 768
BtgZI GCGATG 2 cut(s) 373, 793
BtsCI GGATG 4 cut(s) 189, 399, 609, 819
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 1 cut(s) 946
Cac8I GCNNGC 4 cut(s) 33, 103, 453, 523
CaiI CAGNNNCTG 2 cut(s) 153, 573
Cfr10I RCCGGY 3 cut(s) 344, 764, 862
DdeI CTNAG 1 cut(s) 963
DpnI GATC 4 cut(s) 176, 596, 856, 1166
DpnII GATC 4 cut(s) 174, 594, 854, 1164
DrdI GACNNNNNNGTC 2 cut(s) 338, 758
DseDI GACNNNNNNGTC 2 cut(s) 338, 758
EaeI YGGCCR 2 cut(s) 346, 766
EagI CGGCCG 2 cut(s) 346, 766
Eam1104I CTCTTC 2 cut(s) 965, 1098
EarI CTCTTC 2 cut(s) 965, 1098
EclXI CGGCCG 2 cut(s) 346, 766
Eco52I CGGCCG 2 cut(s) 346, 766
Eco57I CTGAAG 2 cut(s) 920, 1013
Eco88I CYCGRG 1 cut(s) 932
FaqI GGGAC 1 cut(s) 1002
FauI CCCGC 4 cut(s) 40, 79, 460, 499
FauNDI CATATG 2 cut(s) 215, 635
FblI GTMKAC 3 cut(s) 15, 426, 435
FokI GGATG 4 cut(s) 176, 386, 596, 806
FspBI CTAG 2 cut(s) 906, 1128
GsaI CCCAGC 3 cut(s) 65, 485, 984
HaeII RGCGCY 2 cut(s) 225, 645
HaeIII GGCC 2 cut(s) 348, 768
HapII CCGG 5 cut(s) 345, 349, 765, 769, 863
Hin1I GRCGYC 3 cut(s) 423, 843, 945
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 5 cut(s) 12, 432, 892, 1042, 1158
HpaII CCGG 5 cut(s) 345, 349, 765, 769, 863
Hpy166II GTNNAC 3 cut(s) 16, 427, 436
Hpy188I TCNGA 1 cut(s) 1055
Hpy188III TCNNGA 6 cut(s) 172, 592, 898, 934, 1162, 1168
Hpy8I GTNNAC 3 cut(s) 16, 427, 436
Hpy99I CGWCG 2 cut(s) 428, 848
HpyCH4III ACNGT 1 cut(s) 1180
HpyCH4IV ACGT 6 cut(s) 339, 423, 759, 843, 945, 953
HpyCH4V TGCA 1 cut(s) 1143
HpyF3I CTNAG 1 cut(s) 963
HpySE526I ACGT 6 cut(s) 339, 423, 759, 843, 945, 953
Hsp92I GRCGYC 3 cut(s) 423, 843, 945
Kzo9I GATC 4 cut(s) 174, 594, 854, 1164
LguI GCTCTTC 1 cut(s) 965
LmnI GCTCC 2 cut(s) 209, 629
MaeI CTAG 2 cut(s) 906, 1128
MaeII ACGT 6 cut(s) 339, 423, 759, 843, 945, 953
MaeIII GTNAC 8 cut(s) 268, 340, 688, 760, 848, 941, 946, 1084
MalI GATC 4 cut(s) 176, 596, 856, 1166
MboI GATC 4 cut(s) 174, 594, 854, 1164
MflI RGATCY 2 cut(s) 854, 1164
MluCI AATT 1 cut(s) 1056
MlyI GAGTC 5 cut(s) 21, 441, 886, 1036, 1167
MmeI TCCRAC 3 cut(s) 333, 753, 984
MroXI GAANNNNTTC 1 cut(s) 1028
MseI TTAA 1 cut(s) 1080
MslI CAYNNNNRTG 1 cut(s) 1013
MspA1I CMGCKG 3 cut(s) 153, 573, 921
MspI CCGG 5 cut(s) 345, 349, 765, 769, 863
MvnI CGCG 6 cut(s) 47, 101, 103, 467, 521, 523
NdeI CATATG 2 cut(s) 215, 635
NdeII GATC 4 cut(s) 174, 594, 854, 1164
NlaIV GGNNCC 5 cut(s) 211, 353, 631, 773, 856
NmuCI GTSAC 7 cut(s) 268, 340, 688, 760, 848, 941, 946
OliI CACNNNNGTG 1 cut(s) 1013
PaeR7I CTCGAG 1 cut(s) 932
PauI GCGCGC 2 cut(s) 101, 521
PciSI GCTCTTC 1 cut(s) 965
PdmI GAANNNNTTC 1 cut(s) 1028
PflFI GACNNNGTC 2 cut(s) 11, 431
PleI GAGTC 5 cut(s) 20, 440, 886, 1036, 1166
PpsI GAGTC 5 cut(s) 20, 440, 886, 1036, 1166
PspFI CCCAGC 3 cut(s) 61, 481, 980
PspN4I GGNNCC 5 cut(s) 211, 353, 631, 773, 856
PstNI CAGNNNCTG 2 cut(s) 153, 573
PsuI RGATCY 2 cut(s) 854, 1164
PsyI GACNNNGTC 2 cut(s) 11, 431
PteI GCGCGC 2 cut(s) 101, 521
RseI CAYNNNNRTG 1 cut(s) 1013
SalI GTCGAC 1 cut(s) 425
SapI GCTCTTC 1 cut(s) 965
SaqAI TTAA 1 cut(s) 1080
Sau3AI GATC 4 cut(s) 174, 594, 854, 1164
SchI GAGTC 5 cut(s) 21, 441, 886, 1036, 1167
SfcI CTRYAG 2 cut(s) 91, 511
Sfr274I CTCGAG 1 cut(s) 932
SlaI CTCGAG 1 cut(s) 932
SmiMI CAYNNNNRTG 1 cut(s) 1013
SmlI CTYRAG 3 cut(s) 278, 698, 932
SmoI CTYRAG 3 cut(s) 278, 698, 932
SpeI ACTAGT 1 cut(s) 1127
Sse9I AATT 1 cut(s) 1056
SspMI CTAG 2 cut(s) 906, 1128
TaaI ACNGT 1 cut(s) 1180
TaiI ACGT 6 cut(s) 342, 426, 762, 846, 948, 956
TaqI TCGA 3 cut(s) 426, 933, 1124
TasI AATT 1 cut(s) 1056
Tru1I TTAA 1 cut(s) 1080
Tru9I TTAA 1 cut(s) 1080
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 7 cut(s) 268, 340, 688, 760, 848, 941, 946
Tsp45I GTSAC 7 cut(s) 268, 340, 688, 760, 848, 941, 946
TspDTI ATGAA 4 cut(s) 193, 613, 983, 1055
TspGWI ACGGA 4 cut(s) 256, 676, 867, 891
TspRI CASTG 1 cut(s) 946
Tth111I GACNNNGTC 2 cut(s) 11, 431
XcmI CCANNNNNNNNNTGG 2 cut(s) 203, 623
XhoI CTCGAG 1 cut(s) 932
XmiI GTMKAC 3 cut(s) 15, 426, 435
XmnI GAANNNNTTC 1 cut(s) 1028
XspI CTAG 2 cut(s) 906, 1128
ZraI GACGTC 3 cut(s) 424, 844, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.