Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0005375

Physical Location & Seq

Genomic Coordinates Forward (+)

109594 .. 114171

Gene Structure 4578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003735.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgcggaaaaaagtgttcattgctttgaattgtcctacattcgatcaggttattgatgtgggtgggaaggagtttagatttacatggtctcgggatggtgacctctgtgacatatatgaagaacgtgaaactggtgaagatggaaatggtttgcttgttgaatcaggatgtgcatggcgcaaagtgaatgttcagcgtatattagatgagtcaactaagaatcatgttaagaggcggtcggaggaagctgaacgcttgcacaaatcacgaaaagccattgtgctagaacagaatccagccatgaagaatcaactaaagcaatttactgctgccacggttaagttattgaggaacactgtgattccagaagcacccatgttcaaacctgaatttcctccccaagaaccagaaaccggggttgttgttgtggatgaggatggaaaaccagaagacagagttggagtggccttgaaatgtcttccaaactatgatcctgctacctgtttgagtggggaagcaagtctatctttccggtactggaagattcgcgattatgcttatgcttatcgctccaagattgcaaccccatctatggttgcagagcacattatttcagctttagaagaattcagcaataagaaacctcctcaacctttgttgctatcttttgacgctaaagaattgaggaaccaagctgcagcttcaacaaagcggtttgaggaagtctgctattctgctgagattctcgttggttttgatggtgtaggcaatccgatatctatcttggatgggattttcgtggcaatcaatgatgatatagactgctgtcctcatccatccaagggtggaacaacatgggtgcatgaggtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataatgcagttattgaggaacactatgattccagaagcacccatgttcaaacctgaatttcctcctcaagcgcaccagaatcaggaccaaacgagcttctcatcaacagccgaaccaaaggatgatacctttgacaatctcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

364

Amino Acids

41.13

Weight (kDa)

5.45

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64440
fragaria_vesca	FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120
malus_domestica	MD05G1050200.v1.1
prunus_persica	Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1
pyrus_communis	pycom05g04210
rosa_chinensis	RchiOBHm_Chr6g0269381
rosa_laevigata	RLG00000013854
rosa_multiflora	Rmu_sc0003735.1_g000029 Rmu_sc0015769.1_g000001 Rmu_ssc0000291.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198770
rosa_rugosa	Rorug06G0047400
rosa_samantha	Rh6AG167800 Rh6AG331500 Rh6BG173100 Rh6CG167200 Rh6DG159000
rosa_wichuraiana	Rw6G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	549
AciI	CCGC	3 cut(s)	4, 235, 712
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	3 cut(s)	389, 626, 1004
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	4 cut(s)	413, 592, 842, 1030
AgsI	TTSAA	6 cut(s)	28, 161, 382, 472, 705, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	5 cut(s)	248, 617, 695, 701, 1044
AluI	AGCT	5 cut(s)	248, 617, 695, 701, 1044
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	329, 695, 698
ApoI	RAATTY	3 cut(s)	389, 626, 1004
AspLEI	GCGC	2 cut(s)	180, 1021
AspS9I	GGNCC	1 cut(s)	1033
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	110, 146
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	1033
BbsI	GAAGAC	2 cut(s)	456, 470
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	316, 682, 710
BccI	CCATC	7 cut(s)	89, 134, 431, 595, 752, 782, 844
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	696
BisI	GCNGC	3 cut(s)	330, 696, 699
BlsI	GCNGC	3 cut(s)	331, 697, 700
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	1033
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	1033
BmiI	GGNNCC	2 cut(s)	689, 900
BmrFI	CCNGG	1 cut(s)	415
BoxI	GACNNNNGTC	1 cut(s)	825
BpiI	GAAGAC	2 cut(s)	456, 470
BpuEI	CTTGAG	1 cut(s)	999
BpuMI	CCSGG	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	333, 414, 840
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 592, 842, 1030
Bse1I	ACTGG	3 cut(s)	136, 542, 902
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	779
BseDI	CCNNGG	3 cut(s)	333, 414, 840
BseGI	GGATG	8 cut(s)	100, 173, 436, 442, 793, 832, 836, 1075
BseJI	GATNNNNATC	1 cut(s)	779
BseLI	CCNNNNNNNGG	4 cut(s)	413, 592, 842, 1030
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	3 cut(s)	136, 542, 902
BseRI	GAGGAG	2 cut(s)	636, 1002
BseXI	GCAGC	3 cut(s)	316, 682, 710
Bsh1236I	CGCG	1 cut(s)	549
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	414, 532
BslI	CCNNNNNNNGG	4 cut(s)	413, 592, 842, 1030
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	2 cut(s)	43, 490
Bsp68I	TCGCGA	1 cut(s)	549
BspACI	CCGC	3 cut(s)	4, 235, 712
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	689, 900
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	136, 542, 902
BssECI	CCNNGG	3 cut(s)	333, 414, 840
BssMI	GATC	2 cut(s)	43, 490
BssT1I	CCWWGG	1 cut(s)	840
Bst4CI	ACNGT	2 cut(s)	337, 358
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	216, 738
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	8 cut(s)	100, 173, 436, 442, 793, 832, 836, 1075
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	180, 1021
BstKTI	GATC	2 cut(s)	46, 493
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	43, 490
BstMCI	CGRYCG	1 cut(s)	239
BstPAI	GACNNNNGTC	1 cut(s)	825
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	316, 682, 710
BstV2I	GAAGAC	2 cut(s)	456, 470
BsuRI	GGCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	8 cut(s)	100, 173, 436, 442, 793, 832, 836, 1075
BtsIMutI	CAGTG	1 cut(s)	354
BtuMI	TCGCGA	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	257
CfoI	GCGC	2 cut(s)	180, 1021
Cfr13I	GGNCC	1 cut(s)	1033
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	9 cut(s)	84, 174, 224, 301, 376, 855, 863, 991, 1090
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	216, 738
DpnI	GATC	2 cut(s)	45, 492
DpnII	GATC	2 cut(s)	43, 490
Eco130I	CCWWGG	1 cut(s)	840
Eco31I	GGTCTC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	1033
Eco88I	CYCGRG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	626
EcoRV	GATATC	1 cut(s)	777
EcoT14I	CCWWGG	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	9 cut(s)	87, 177, 227, 304, 379, 858, 866, 994, 1093
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	9 cut(s)	83, 173, 223, 300, 375, 854, 862, 990, 1089
Fnu4HI	GCNGC	3 cut(s)	330, 696, 699
FokI	GGATG	8 cut(s)	107, 180, 443, 449, 800, 819, 823, 1082
Fsp4HI	GCNGC	3 cut(s)	330, 696, 699
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	2 cut(s)	179, 1020
GluI	GCNGC	3 cut(s)	330, 696, 699
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	2 cut(s)	414, 532
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	2 cut(s)	180, 1021
Hin1II	CATG	9 cut(s)	87, 177, 227, 304, 379, 858, 866, 994, 1093
Hin6I	GCGC	2 cut(s)	178, 1019
HinP1I	GCGC	2 cut(s)	178, 1019
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	414, 532
HphI	GGTGA	2 cut(s)	110, 146
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	241, 774
Hpy188III	TCNNGA	7 cut(s)	92, 165, 267, 365, 548, 980, 1031
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	337, 358
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	8 cut(s)	173, 259, 581, 599, 698, 862, 881, 955
HpyF3I	CTNAG	2 cut(s)	216, 738
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	9 cut(s)	87, 177, 227, 304, 379, 858, 866, 994, 1093
HspAI	GCGC	2 cut(s)	178, 1019
Kzo9I	GATC	2 cut(s)	43, 490
LmnI	GCTCC	2 cut(s)	575, 908
Lsp1109I	GCAGC	3 cut(s)	316, 682, 710
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	98, 107
MalI	GATC	2 cut(s)	45, 492
MboI	GATC	2 cut(s)	43, 490
MboII	GAAGA	8 cut(s)	131, 149, 316, 461, 470, 553, 635, 923
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	6 cut(s)	28, 320, 389, 626, 680, 1004
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	3 cut(s)	219, 439, 886
MseI	TTAA	3 cut(s)	228, 339, 939
MspI	CCGG	2 cut(s)	414, 532
MspR9I	CCNGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	549
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	43, 490
NlaIII	CATG	9 cut(s)	87, 177, 227, 304, 379, 858, 866, 994, 1093
NlaIV	GGNNCC	2 cut(s)	689, 900
NmuCI	GTSAC	2 cut(s)	98, 107
NruI	TCGCGA	1 cut(s)	549
PfeI	GAWTC	9 cut(s)	161, 220, 292, 307, 361, 544, 742, 976, 1027
PkrI	GCNGC	3 cut(s)	331, 697, 700
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	825
PspEI	GGTNACC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	689, 900
PspPI	GGNCC	1 cut(s)	1033
PstI	CTGCAG	1 cut(s)	700
RruI	TCGCGA	1 cut(s)	549
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	228, 339, 939
SatI	GCNGC	3 cut(s)	330, 696, 699
Sau3AI	GATC	2 cut(s)	43, 490
Sau96I	GGNCC	1 cut(s)	1033
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	606
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	1 cut(s)	1033
SmlI	CTYRAG	1 cut(s)	1014
SmoI	CTYRAG	1 cut(s)	1014
Sse9I	AATT	6 cut(s)	28, 320, 389, 626, 680, 1004
SsiI	CCGC	3 cut(s)	4, 235, 712
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	337, 358
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	42
TasI	AATT	6 cut(s)	28, 320, 389, 626, 680, 1004
TfiI	GAWTC	9 cut(s)	161, 220, 292, 307, 361, 544, 742, 976, 1027
Tru1I	TTAA	3 cut(s)	228, 339, 939
Tru9I	TTAA	3 cut(s)	228, 339, 939
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	98, 107
TseI	GCWGC	3 cut(s)	329, 695, 698
Tsp45I	GTSAC	2 cut(s)	98, 107
TspDTI	ATGAA	4 cut(s)	7, 132, 317, 923
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	1033
XapI	RAATTY	3 cut(s)	389, 626, 1004
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.