Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015769.1

Orthogroup ID

OG0005375

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1559

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 784 bp

gcagttattgaggaacactgtgattccagaagcacccatgttcaaacctgaatttcctccccaagaaccagaaaccggggttgttgttgtggatgaggatggaaaaccagaagacagagttggagtggccttgaaatgtcttccaaactatgatcctgctacctgtttgagtggggaagcaagtctatctttccggtactggaagattcgcgattatgcttatgcttatcgctccaagattgcaaccccatctatggttgcagagcacattatttcagctttagaagaattcagcaataagaaacctcctcaacctttgttgctatcttttgacgctaaagaattgaggaaccaagctgcagcttcaacaaagcggtttgaggaagtctgctattctgctgagattctcgttggttttgatggtgtaggcaatccgatatctatcttggatgggattttcgtggcaatcaaggatgatatagactgctgtcctcatccgtccaagggtggaacaacatgggtgcatgaggttcgcactgtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctatatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaaaaggaatacaaggatatcaattccaacttcatgtatgcaatctgcaatgaagtcgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

260

Amino Acids

29.18

Weight (kDa)

5.82

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64440
fragaria_vesca	FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120
malus_domestica	MD05G1050200.v1.1
prunus_persica	Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1
pyrus_communis	pycom05g04210
rosa_chinensis	RchiOBHm_Chr6g0269381
rosa_laevigata	RLG00000013854
rosa_multiflora	Rmu_sc0003735.1_g000029 Rmu_sc0015769.1_g000001 Rmu_ssc0000291.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198770
rosa_rugosa	Rorug06G0047400
rosa_samantha	Rh6AG167800 Rh6AG331500 Rh6BG173100 Rh6CG167200 Rh6DG159000
rosa_wichuraiana	Rw6G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	374, 680
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	51, 288, 636
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	75, 254, 504
AgsI	TTSAA	3 cut(s)	44, 134, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AluBI	AGCT	4 cut(s)	279, 357, 363, 674
AluI	AGCT	4 cut(s)	279, 357, 363, 674
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	357, 360, 716
ApoI	RAATTY	3 cut(s)	51, 288, 636
AsuC2I	CCSGG	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	118, 132
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	344, 372, 728
BccI	CCATC	4 cut(s)	93, 257, 414, 444
BcgI	CGANNNNNNTGC	3 cut(s)	513, 547, 758
BciVI	GTATCC	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	4 cut(s)	358, 361, 680, 717
BlsI	GCNGC	4 cut(s)	359, 362, 681, 718
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	351, 571
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	697
BoxI	GACNNNNGTC	1 cut(s)	487
BpiI	GAAGAC	2 cut(s)	118, 132
BpuMI	CCSGG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	76, 502
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 254, 504
Bse1I	ACTGG	3 cut(s)	204, 573, 713
Bse3DI	GCAATG	1 cut(s)	776
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	76, 502
BseGI	GGATG	5 cut(s)	98, 104, 455, 479, 494
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	75, 254, 504
BseMI	GCAATG	1 cut(s)	776
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	3 cut(s)	204, 573, 713
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	344, 372, 728
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	76, 194
BslI	CCNNNNNNNGG	3 cut(s)	75, 254, 504
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	152, 641
Bsp68I	TCGCGA	1 cut(s)	211
BspACI	CCGC	2 cut(s)	374, 680
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	392
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	351, 571
BspMAI	CTGCAG	1 cut(s)	362
BspPI	GGATC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	776
BsrI	ACTGG	3 cut(s)	204, 573, 713
BssECI	CCNNGG	2 cut(s)	76, 502
BssMI	GATC	2 cut(s)	152, 641
BssT1I	CCWWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	20, 539
BstDEI	CTNAG	1 cut(s)	400
BstF5I	GGATG	5 cut(s)	98, 104, 455, 479, 494
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	155, 644
BstMBI	GATC	2 cut(s)	152, 641
BstMWI	GCNNNNNNNGC	1 cut(s)	685
BstPAI	GACNNNNGTC	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	344, 372, 728
BstV2I	GAAGAC	2 cut(s)	118, 132
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	5 cut(s)	98, 104, 455, 479, 494
BtsIMutI	CAGTG	3 cut(s)	16, 535, 706
BtuMI	TCGCGA	1 cut(s)	211
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	5 cut(s)	38, 517, 525, 666, 755
CviJI	RGCY	7 cut(s)	129, 279, 357, 363, 558, 564, 674
CviKI_1	RGCY	7 cut(s)	129, 279, 357, 363, 558, 564, 674
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	2 cut(s)	154, 643
DpnII	GATC	2 cut(s)	152, 641
Eco130I	CCWWGG	1 cut(s)	502
Eco32I	GATATC	2 cut(s)	439, 740
EcoRI	GAATTC	1 cut(s)	288
EcoRV	GATATC	2 cut(s)	439, 740
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	5 cut(s)	41, 520, 528, 669, 758
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	5 cut(s)	37, 516, 524, 665, 754
Fnu4HI	GCNGC	4 cut(s)	358, 361, 680, 717
FokI	GGATG	5 cut(s)	105, 111, 462, 481, 486
Fsp4HI	GCNGC	4 cut(s)	358, 361, 680, 717
GluI	GCNGC	4 cut(s)	358, 361, 680, 717
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	2 cut(s)	76, 194
HgaI	GACGC	1 cut(s)	342
Hin1II	CATG	5 cut(s)	41, 520, 528, 669, 758
HinfI	GANTC	3 cut(s)	23, 206, 404
HpaII	CCGG	2 cut(s)	76, 194
Hpy188I	TCNGA	2 cut(s)	436, 646
Hpy188III	TCNNGA	3 cut(s)	27, 210, 692
HpyAV	CCTTC	1 cut(s)	663
HpyCH4III	ACNGT	2 cut(s)	20, 539
HpyCH4V	TGCA	8 cut(s)	243, 261, 360, 524, 552, 688, 762, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	685
HpyF3I	CTNAG	1 cut(s)	400
Hsp92II	CATG	5 cut(s)	41, 520, 528, 669, 758
Kzo9I	GATC	2 cut(s)	152, 641
LmnI	GCTCC	2 cut(s)	237, 579
Lsp1109I	GCAGC	3 cut(s)	344, 372, 728
LweI	GCATC	1 cut(s)	697
MalI	GATC	2 cut(s)	154, 643
MboI	GATC	2 cut(s)	152, 641
MboII	GAAGA	5 cut(s)	123, 132, 215, 297, 594
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	5 cut(s)	51, 288, 342, 636, 743
MmeI	TCCRAC	3 cut(s)	101, 557, 772
MseI	TTAA	2 cut(s)	610, 634
MspI	CCGG	2 cut(s)	76, 194
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	685
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	152, 641
NlaIII	CATG	5 cut(s)	41, 520, 528, 669, 758
NlaIV	GGNNCC	2 cut(s)	351, 571
NruI	TCGCGA	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	23, 206, 404
PkrI	GCNGC	4 cut(s)	359, 362, 681, 718
PshAI	GACNNNNGTC	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	351, 571
PstI	CTGCAG	1 cut(s)	362
RruI	TCGCGA	1 cut(s)	211
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	610, 634
SatI	GCNGC	4 cut(s)	358, 361, 680, 717
Sau3AI	GATC	2 cut(s)	152, 641
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	51, 288, 342, 636, 743
SsiI	CCGC	2 cut(s)	374, 680
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	20, 539
TasI	AATT	5 cut(s)	51, 288, 342, 636, 743
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	23, 206, 404
Tru1I	TTAA	2 cut(s)	610, 634
Tru9I	TTAA	2 cut(s)	610, 634
TscAI	CASTG	3 cut(s)	23, 542, 713
TseI	GCWGC	3 cut(s)	357, 360, 716
TspDTI	ATGAA	3 cut(s)	594, 643, 743
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	3 cut(s)	23, 542, 713
XapI	RAATTY	3 cut(s)	51, 288, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.