Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005375

Physical Location & Seq

Genomic Coordinates Forward (+)

53286586 .. 53291163

Gene Structure 4578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG331500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACAGTCGCCCGAATCAACAACGGTGCCTCTGCTCAGTACTCAGTACTCACCCTGCTCTGTTTTTGTCTTGTTTTGTTTGTGCAGTTATTGAGGAATACTGTGATTCCAGAAGCACCCATGTTCAAACCTGAATTTCCTCCCCAAGAACCAGAAACCGGGGTTGTTGTTGTGGATGAGGATGGAAAACCAGAAGACAGAGTTGGAGTGGCCTTGAAATGTCTTCCAAACTATGATCCTGCTACCTGTTTGAGTGGGGAAGCAAGTCTATCTTTCCGGTACTGGAAGATTCGCGATTATGCTTATGCTTATCGCTCCAAGATTGCAACCCCATCTATGGTTGCAGAGCACATTATTTCAGCTTTAGAAGAATTCAGCAATAAGAAACCTCCTCAACCTTTGTTGCTATCTTTTGATGCTAAAGAATTGAGGAACCAAGCTGCAGCTTCAACAAAGCGGTTTGAGGAAGGCAATCCGATATCTATCTTGGATGGGATTTTCGTGGCAATCAATGATGATATAGACTGCTGTCCTCATCCATCCAAGGGTGGAACAACATGGGTGCATGAGGTTCGCACTGTCAGTAGGGATGCAGTTTGCGTTTCAAAGTTGCGTAGTTGTGGTGTGATTTTTATTGGGAAAGCAAATATGCATGAGATGGGCATGGGTACAACTGGAAATAATCCAAATTATGGACATTGTCAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTAACGATAATTGTATGTTCTGCAGCATTGATTTATATGAATAAGCATTTTAGTGGTGGCAGGTTGTTGGCTTGCATTTCTTCCCGCCCAGGCCAATGTGGAAGATCTGATGGGTACATTTTGGAGGGGAAAGAATTAGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

359

Amino Acids

39.39

Weight (kDa)

8.19

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidase	PF01425	177 - 279	2.4e-14	Amidase
Ribosomal_S8e	PF01201	304 - 335	2.5e-06	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64440
fragaria_vesca	FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120 FvH4_2g11120
malus_domestica	MD05G1050200.v1.1
prunus_persica	Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1 Prupe.8G076300_v2.0.a1
pyrus_communis	pycom05g04210
rosa_chinensis	RchiOBHm_Chr6g0269381
rosa_laevigata	RLG00000013854
rosa_multiflora	Rmu_sc0003735.1_g000029 Rmu_sc0015769.1_g000001 Rmu_ssc0000291.1_g000010
rosa_roxburghii	Rroxscaffold_7G00198770
rosa_rugosa	Rorug06G0047400
rosa_samantha	Rh6AG167800 Rh6AG331500 Rh6BG173100 Rh6CG167200 Rh6DG159000
rosa_wichuraiana	Rw6G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	933
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccII	CGCG	1 cut(s)	417
AciI	CCGC	3 cut(s)	102, 580, 967
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	107, 257, 494
AfaI	GTAC	5 cut(s)	164, 171, 404, 793, 998
AfiI	CCNNNNNNNGG	4 cut(s)	281, 460, 668, 815
AgsI	TTSAA	4 cut(s)	250, 340, 573, 729
AjnI	CCWGG	1 cut(s)	970
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 309, 341
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	485, 563, 569, 1064
AluI	AGCT	4 cut(s)	485, 563, 569, 1064
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	3, 333, 973
ApeKI	GCWGC	6 cut(s)	563, 566, 905, 1061, 1070, 1073
ApoI	RAATTY	3 cut(s)	107, 257, 494
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	76, 166, 871
BanI	GGYRCC	1 cut(s)	149
BbsI	GAAGAC	2 cut(s)	324, 338
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	6 cut(s)	550, 578, 917, 1057, 1060, 1073
BccI	CCATC	6 cut(s)	299, 463, 608, 670, 775, 986
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	1 cut(s)	972
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	856
BfmI	CTRYAG	2 cut(s)	564, 903
BfuAI	ACCTGC	1 cut(s)	933
BglII	AGATCT	1 cut(s)	986
BisI	GCNGC	7 cut(s)	102, 564, 567, 906, 1062, 1071, 1074
BlsI	GCNGC	7 cut(s)	103, 565, 568, 907, 1063, 1072, 1075
BmcAI	AGTACT	2 cut(s)	164, 171
Bme1390I	CCNGG	2 cut(s)	283, 972
BmiI	GGNNCC	2 cut(s)	151, 557
BmrFI	CCNGG	2 cut(s)	283, 972
BmsI	GCATC	2 cut(s)	529, 703
BoxI	GACNNNNGTC	1 cut(s)	651
BpiI	GAAGAC	2 cut(s)	324, 338
BpmI	CTGGAG	1 cut(s)	1025
BpuMI	CCSGG	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	282, 666, 970
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 460, 668, 815
Bse1I	ACTGG	2 cut(s)	410, 802
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	972
BseDI	CCNNGG	3 cut(s)	282, 666, 970
BseGI	GGATG	6 cut(s)	304, 310, 619, 658, 662, 718
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	4 cut(s)	281, 460, 668, 815
BseMII	CTCAG	2 cut(s)	173, 180
BseNI	ACTGG	2 cut(s)	410, 802
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	6 cut(s)	550, 578, 917, 1057, 1060, 1073
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	5, 335, 975
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	282, 400
BslI	CCNNNNNNNGG	4 cut(s)	281, 460, 668, 815
BsmAI	GTCTC	1 cut(s)	856
BsnI	GGCC	3 cut(s)	5, 335, 975
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	358, 986
Bsp68I	TCGCGA	1 cut(s)	417
BspACI	CCGC	3 cut(s)	102, 580, 967
BspANI	GGCC	3 cut(s)	5, 335, 975
BspCNI	CTCAG	2 cut(s)	172, 179
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	151, 557
BspMAI	CTGCAG	2 cut(s)	568, 907
BspMI	ACCTGC	1 cut(s)	933
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	410, 802
BssECI	CCNNGG	3 cut(s)	282, 666, 970
BssMI	GATC	2 cut(s)	358, 986
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	5 cut(s)	130, 149, 226, 703, 833
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstC8I	GCNNGC	1 cut(s)	955
BstDEI	CTNAG	2 cut(s)	159, 166
BstF5I	GGATG	6 cut(s)	304, 310, 619, 658, 662, 718
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	2 cut(s)	361, 989
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	2 cut(s)	358, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	1067, 1070
BstNI	CCWGG	1 cut(s)	972
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	281, 970
BstSFI	CTRYAG	2 cut(s)	564, 903
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	6 cut(s)	550, 578, 917, 1057, 1060, 1073
BstV2I	GAAGAC	2 cut(s)	324, 338
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
BsuRI	GGCC	3 cut(s)	5, 335, 975
BtsCI	GGATG	6 cut(s)	304, 310, 619, 658, 662, 718
BtsIMutI	CAGTG	1 cut(s)	699
BtuMI	TCGCGA	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	933
Cac8I	GCNNGC	1 cut(s)	955
Csp6I	GTAC	5 cut(s)	163, 170, 403, 792, 997
CviAII	CATG	6 cut(s)	244, 681, 689, 776, 787, 1030
CviJI	RGCY	9 cut(s)	5, 67, 335, 485, 563, 569, 953, 975, 1064
CviKI_1	RGCY	9 cut(s)	5, 67, 335, 485, 563, 569, 953, 975, 1064
CviQI	GTAC	5 cut(s)	163, 170, 403, 792, 997
DdeI	CTNAG	2 cut(s)	159, 166
DpnI	GATC	2 cut(s)	360, 988
DpnII	GATC	2 cut(s)	358, 986
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	603
EcoRI	GAATTC	2 cut(s)	107, 494
EcoRII	CCWGG	1 cut(s)	970
EcoRV	GATATC	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	6 cut(s)	247, 684, 692, 779, 790, 1033
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FatI	CATG	6 cut(s)	243, 680, 688, 775, 786, 1029
FauI	CCCGC	1 cut(s)	974
Fnu4HI	GCNGC	7 cut(s)	102, 564, 567, 906, 1062, 1071, 1074
FokI	GGATG	6 cut(s)	311, 317, 626, 645, 649, 725
Fsp4HI	GCNGC	7 cut(s)	102, 564, 567, 906, 1062, 1071, 1074
GluI	GCNGC	7 cut(s)	102, 564, 567, 906, 1062, 1071, 1074
GsuI	CTGGAG	1 cut(s)	1025
HaeIII	GGCC	3 cut(s)	5, 335, 975
HapII	CCGG	2 cut(s)	282, 400
Hin1II	CATG	6 cut(s)	247, 684, 692, 779, 790, 1033
HinfI	GANTC	4 cut(s)	41, 138, 229, 412
HpaII	CCGG	2 cut(s)	282, 400
HphI	GGTGA	3 cut(s)	76, 166, 871
Hpy188I	TCNGA	4 cut(s)	94, 600, 828, 991
Hpy188III	TCNNGA	3 cut(s)	233, 416, 1042
HpyAV	CCTTC	3 cut(s)	88, 584, 1045
HpyCH4III	ACNGT	5 cut(s)	130, 149, 226, 703, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1067, 1070
HpyF3I	CTNAG	2 cut(s)	159, 166
Hsp92II	CATG	6 cut(s)	247, 684, 692, 779, 790, 1033
Kzo9I	GATC	2 cut(s)	358, 986
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	6 cut(s)	550, 578, 917, 1057, 1060, 1073
LweI	GCATC	2 cut(s)	529, 703
MalI	GATC	2 cut(s)	360, 988
MboI	GATC	2 cut(s)	358, 986
MboII	GAAGA	9 cut(s)	329, 338, 421, 503, 890, 954, 996, 1045, 1060
MfeI	CAATTG	2 cut(s)	854, 866
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	1 cut(s)	474
MmeI	TCCRAC	2 cut(s)	69, 307
Mph1103I	ATGCAT	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	1064
MspI	CCGG	2 cut(s)	282, 400
MspR9I	CCNGG	2 cut(s)	283, 972
MunI	CAATTG	2 cut(s)	854, 866
MvaI	CCWGG	1 cut(s)	972
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	1067, 1070
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	2 cut(s)	358, 986
NlaIII	CATG	6 cut(s)	247, 684, 692, 779, 790, 1033
NlaIV	GGNNCC	2 cut(s)	151, 557
NruI	TCGCGA	1 cut(s)	417
NsiI	ATGCAT	1 cut(s)	777
PfeI	GAWTC	4 cut(s)	41, 138, 229, 412
PflFI	GACNNNGTC	1 cut(s)	822
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	7 cut(s)	103, 565, 568, 907, 1063, 1072, 1075
PshAI	GACNNNNGTC	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	970
PspN4I	GGNNCC	2 cut(s)	151, 557
PstI	CTGCAG	2 cut(s)	568, 907
PsuI	RGATCY	1 cut(s)	986
PsyI	GACNNNGTC	1 cut(s)	822
PvuII	CAGCTG	1 cut(s)	1064
RruI	TCGCGA	1 cut(s)	417
RsaI	GTAC	5 cut(s)	164, 171, 404, 793, 998
RsaNI	GTAC	5 cut(s)	163, 170, 403, 792, 997
RseI	CAYNNNNRTG	1 cut(s)	933
SatI	GCNGC	7 cut(s)	102, 564, 567, 906, 1062, 1071, 1074
Sau3AI	GATC	2 cut(s)	358, 986
ScaI	AGTACT	2 cut(s)	164, 171
ScrFI	CCNGG	2 cut(s)	283, 972
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	2 cut(s)	529, 703
SfcI	CTRYAG	2 cut(s)	564, 903
SmiMI	CAYNNNNRTG	1 cut(s)	933
SsiI	CCGC	3 cut(s)	102, 580, 967
StyD4I	CCNGG	2 cut(s)	281, 970
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	5 cut(s)	130, 149, 226, 703, 833
TatI	WGTACW	2 cut(s)	162, 169
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	4 cut(s)	41, 138, 229, 412
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	6 cut(s)	563, 566, 905, 1061, 1070, 1073
TspDTI	ATGAA	3 cut(s)	70, 935, 1046
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	822
Van91I	CCANNNNNTGG	1 cut(s)	815
XapI	RAATTY	3 cut(s)	107, 257, 494
ZrmI	AGTACT	2 cut(s)	164, 171
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.