Rmu_sc0003743.1_g000020

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003743.1
OG0018659
Physical Location & Seq
Forward (+)
84891 .. 86730
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
atgggaaattttgagtttgtggccgagcttctgcactcgtatcctgacttgatatgggaaacagatgaaaaacaccggagtgtatttcacattgcagttatgttccatgacacaagtttcctcaatctgctaaatcagttgggtgtatacaaggattttatagtctccttcaaggacgatgagaacaataacatactgcatttagcagcaaaactggctccaccaaatcaattgggtaccgtgccaggacctgcctttcaaatgcaacaggagttattgtggttccaggggctggaaaagattctccaaccttcctatctagagatgaaaaatgcagaaggtgacggcctgatattggttcgcagggatgcgggtttcctttcctcaaagggcaaggagatggagggcggcgggtttctctgtcgtcgatctctcaaaaactttcaaggtgaagatgatggcggcgtatggtatctatctgaccgtatcaggatcaaaactcgggttctacgtcttgggtggacgtccgacattgacgttgttgaatgggtggctgctggttttcgggctgccaggatggaaggctggaggaacgagtttgatgggcttggtcatcgtttgatgcagctgaggattgtagctggttgtagggacgtgatggctcttaacccgacggcaattggggatggctcggttaatgttggctgtggcgagatgcttgtcagcggtagtgtaaatggtatggagatgttgactgctggcctgtggcctaggattttctctaggttcatgggttggggggtcaatgtatttgggcttgcgttcgagtccattggcttgggcttggactattgtcttcctttttctagtttattttatagcaattcttctagttttgtgggaggaatctatagtttctctttgagatttataaccaaaaatatctgggatgtcttggcctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

321

Amino Acids

35.97

Weight (kDa)

5.44

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012775 RLG00000012778
rosa_multiflora Rmu_sc0003743.1_g000020
rosa_rugosa Rorug06G0159900 Rorug06G0159900
rosa_samantha Rh1AG019900 Rh1BG015100 Rh1CG017700 Rh1CG017800 Rh1DG015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 932
AatII GACGTC 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 259
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 147
AciI CCGC 5 cut(s) 371, 408, 411, 462, 726
AclWI GGATC 1 cut(s) 500
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 292, 355
AgsI TTSAA 4 cut(s) 172, 260, 446, 545
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 3 cut(s) 244, 285, 572
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 3 cut(s) 28, 628, 641
AluI AGCT 3 cut(s) 28, 628, 641
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 500
AlwNI CAGNNNCTG 2 cut(s) 251, 292
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 5 cut(s) 21, 346, 760, 767, 957
ApeKI GCWGC 4 cut(s) 206, 554, 569, 625
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 300
Asp718I GGTACC 1 cut(s) 236
AspA2I CCTAGG 1 cut(s) 770
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 353, 461
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 1 cut(s) 248
AvrII CCTAGG 1 cut(s) 770
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 848
BbvCI CCTCAGC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 218, 541, 556, 637
BccI CCATC 6 cut(s) 394, 452, 571, 596, 652, 680
BceAI ACGGC 2 cut(s) 361, 690
BciT130I CCWGG 3 cut(s) 246, 287, 574
BciVI GTATCC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 5 cut(s) 320, 771, 783, 867, 891
BfmI CTRYAG 1 cut(s) 910
BfuAI ACCTGC 1 cut(s) 259
BfuI GTATCC 1 cut(s) 51
BisI GCNGC 6 cut(s) 207, 409, 463, 555, 570, 626
BlnI CCTAGG 1 cut(s) 770
BlsI GCNGC 6 cut(s) 208, 410, 464, 556, 571, 627
Bme1390I CCNGG 3 cut(s) 246, 287, 574
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 501
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 219, 238, 284
BmrFI CCNGG 3 cut(s) 246, 287, 574
BmsI GCATC 3 cut(s) 358, 612, 705
BoxI GACNNNNGTC 1 cut(s) 852
BpiI GAAGAC 1 cut(s) 848
BpmI CTGGAG 1 cut(s) 607
Bpu10I CCTNAGC 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 286, 770
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 355
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 3 cut(s) 246, 287, 574
BseDI CCNNGG 2 cut(s) 286, 770
BseGI GGATG 4 cut(s) 373, 582, 691, 955
BseLI CCNNNNNNNGG 2 cut(s) 292, 355
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 620
BseNI ACTGG 1 cut(s) 219
BseXI GCAGC 4 cut(s) 218, 541, 556, 637
BsgI GTGCAG 1 cut(s) 17
BshFI GGCC 5 cut(s) 23, 348, 762, 769, 959
BshNI GGYRCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 292, 355
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 5 cut(s) 23, 348, 762, 769, 959
BsoBI CYCGRG 1 cut(s) 501
Bsp143I GATC 2 cut(s) 428, 492
BspACI CCGC 5 cut(s) 371, 408, 411, 462, 726
BspANI GGCC 5 cut(s) 23, 348, 762, 769, 959
BspCNI CTCAG 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 219, 238, 284
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 286, 770
BssMI GATC 2 cut(s) 428, 492
BssNAI GTATAC 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 524
BssT1I CCWWGG 1 cut(s) 770
Bst1107I GTATAC 1 cut(s) 148
Bst2UI CCWGG 3 cut(s) 246, 287, 574
Bst4CI ACNGT 2 cut(s) 241, 485
BstACI GRCGYC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 760, 819
BstDEI CTNAG 1 cut(s) 629
BstF5I GGATG 4 cut(s) 373, 582, 691, 955
BstKTI GATC 2 cut(s) 431, 495
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 428, 492
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 3 cut(s) 246, 287, 574
BstPAI GACNNNNGTC 1 cut(s) 852
BstSCI CCNGG 3 cut(s) 244, 285, 572
BstSFI CTRYAG 1 cut(s) 910
BstV1I GCAGC 4 cut(s) 218, 541, 556, 637
BstV2I GAAGAC 1 cut(s) 848
BstXI CCANNNNNNTGG 1 cut(s) 838
BstZ17I GTATAC 1 cut(s) 148
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 5 cut(s) 23, 348, 762, 769, 959
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 4 cut(s) 373, 582, 691, 955
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 760, 819
CaiI CAGNNNCTG 2 cut(s) 251, 292
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 107, 790
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 629
DpnI GATC 2 cut(s) 430, 494
DpnII GATC 2 cut(s) 428, 492
EaeI YGGCCR 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 3 cut(s) 244, 285, 572
EcoT14I CCWWGG 1 cut(s) 770
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 2 cut(s) 110, 793
FaqI GGGAC 1 cut(s) 665
FatI CATG 2 cut(s) 106, 789
FauI CCCGC 2 cut(s) 364, 404
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 6 cut(s) 207, 409, 463, 555, 570, 626
FokI GGATG 4 cut(s) 380, 589, 698, 962
Fsp4HI GCNGC 6 cut(s) 207, 409, 463, 555, 570, 626
FspBI CTAG 5 cut(s) 320, 771, 783, 867, 891
GluI GCNGC 6 cut(s) 207, 409, 463, 555, 570, 626
GsuI CTGGAG 1 cut(s) 607
HaeIII GGCC 5 cut(s) 23, 348, 762, 769, 959
HapII CCGG 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 2 cut(s) 110, 793
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 3 cut(s) 301, 827, 906
HpaII CCGG 1 cut(s) 76
HphI GGTGA 2 cut(s) 353, 461
Hpy166II GTNNAC 3 cut(s) 148, 522, 753
Hpy188I TCNGA 2 cut(s) 481, 529
Hpy188III TCNNGA 4 cut(s) 44, 320, 490, 963
Hpy8I GTNNAC 3 cut(s) 148, 522, 753
Hpy99I CGWCG 2 cut(s) 429, 676
HpyAV CCTTC 4 cut(s) 178, 321, 332, 575
HpyCH4III ACNGT 2 cut(s) 241, 485
HpyCH4IV ACGT 4 cut(s) 511, 524, 537, 654
HpyCH4V TGCA 6 cut(s) 34, 95, 199, 265, 335, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 629
HpySE526I ACGT 4 cut(s) 511, 524, 537, 654
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 2 cut(s) 110, 793
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 428, 492
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 4 cut(s) 218, 541, 556, 637
LweI GCATC 3 cut(s) 358, 612, 705
MaeI CTAG 5 cut(s) 320, 771, 783, 867, 891
MaeII ACGT 4 cut(s) 511, 524, 537, 654
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 430, 494
MboI GATC 2 cut(s) 428, 492
MboII GAAGA 3 cut(s) 464, 848, 879
MfeI CAATTG 2 cut(s) 230, 678
MluCI AATT 4 cut(s) 7, 230, 678, 883
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 2 cut(s) 331, 552
MnlI CCTC 6 cut(s) 131, 394, 397, 582, 624, 896
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 666, 696
MslI CAYNNNNRTG 1 cut(s) 78
MspA1I CMGCKG 2 cut(s) 628, 726
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 3 cut(s) 246, 287, 574
MunI CAATTG 2 cut(s) 230, 678
MvaI CCWGG 3 cut(s) 246, 287, 574
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 2 cut(s) 428, 492
NlaIII CATG 2 cut(s) 110, 793
NlaIV GGNNCC 3 cut(s) 219, 238, 284
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 341
OliI CACNNNNGTG 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 301, 906
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 6 cut(s) 208, 410, 464, 556, 571, 627
PleI GAGTC 1 cut(s) 835
PpsI GAGTC 1 cut(s) 835
PpuMI RGGWCCY 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 852
PsiI TTATAA 1 cut(s) 932
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 3 cut(s) 244, 285, 572
PspGI CCWGG 3 cut(s) 244, 285, 572
PspN4I GGNNCC 3 cut(s) 219, 238, 284
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PstNI CAGNNNCTG 2 cut(s) 251, 292
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 666, 696
SatI GCNGC 6 cut(s) 207, 409, 463, 555, 570, 626
Sau3AI GATC 2 cut(s) 428, 492
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 3 cut(s) 246, 287, 574
SfaNI GCATC 3 cut(s) 358, 612, 705
SfcI CTRYAG 1 cut(s) 910
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 4 cut(s) 7, 230, 678, 883
SsiI CCGC 5 cut(s) 371, 408, 411, 462, 726
SspMI CTAG 5 cut(s) 320, 771, 783, 867, 891
StyD4I CCNGG 3 cut(s) 244, 285, 572
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 241, 485
TaiI ACGT 4 cut(s) 514, 527, 540, 657
TaqI TCGA 2 cut(s) 427, 825
TasI AATT 4 cut(s) 7, 230, 678, 883
TauI GCSGC 2 cut(s) 411, 465
TfiI GAWTC 2 cut(s) 301, 906
Tru1I TTAA 2 cut(s) 666, 696
Tru9I TTAA 2 cut(s) 666, 696
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 4 cut(s) 206, 554, 569, 625
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 81, 341, 778
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 7
XbaI TCTAGA 1 cut(s) 319
XmaJI CCTAGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 5 cut(s) 320, 771, 783, 867, 891
ZraI GACGTC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.