Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0008804

Physical Location & Seq

Genomic Coordinates Reverse (-)

51796 .. 60480

Gene Structure 8685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ctgagaatggctacccgaaccctcggggcacttgtggtgctccttttggcgattacgatatgcgaagccgcctccatcttccacccgatctctgactctcaccgatccgccgcttctgagctcttcacccagggatccttcgacagtttagaagaggcgtatgaagccctgagatcgtttgaggttctcgggattgataagcctgatatacgtggcgctacttgtaagtctgttgtggaaaagcttggatcatcggaatctgctccaaaagacttgttctatgccttaaaggttaacagcattttgaagtgtgaggttaagaaggatgtatttgagggcattgcttcaagacttaaagctgtggtaaatggtgcaagctcattgctagacatctattactctattggcagtttggtgcttattaaggatcaaacttctgaggttgatgtacttcttgctgatgctgatggcattttccgatctatcaagtctctgagccagagtgatggaaggtggcgctacagttcagataatccccagtctagtacctatgctgctggattagcgattgaagcacttgctggagttgtttcattagcatcctctgaaattgatcagtctatgattgggaaattaaaaagggatgtttcgaagctttttgacagtgtcgagaaatatgatgatggcgccttttattttgatgaaaaagttgatcagagtcctctttcaactaccgcgtcagttgttcgagggctgacagcgttagcagctgtgacgtctgaaaagttaaaggttccaggggagaagattttgggtttggcaaaattcttccttgggattggcattccaggcaataataaagatttctttaaccagattgactctttagcttctttggaaagcaataaggtctccgtccctctgattttatcgcttccaactacagtgctttcattgactaaaaaagaccagctcaaggttaaagtcggtactgtgcttggatcaagtgctcctcctctgaccgttaaactgatgcgagctttcagttctggttcaaaagatgcttccattattgccagccaggaactcaagttcgttaaaaaaagtggataccatgtcctggatgttttgccaaaaagtgttgatgttggaagttacatatttgtctttgaggttgttcttcatgattctgaagacgaaatcgtttatacaactggaggtttggcccaagtagatgtatttgttaccggagttatcaatatagagaatgcagaaatttctgtacttgaaagcgataagagtgtagaaacccagaaaaaattagatttagctggagaaaatgcagtttcactatcagcaaaccacctccaaaagctgcgcctatcctttcaattgactactcctttgggtcatgcttttaagccacatcaggtgtttctcaaattgacacatgagaccaaggttgaacatatgtttgtggtggggaactccggcaaaaaatttgagaaaatactagatttcctcgggttggttgacaagttttactatctctcgggtagttacgaccttcaattaactgttggagatgctgtaatggagaactctttcttacgggctattggccacattgatttagatctaccagaagcacctgagaaggccacccgccctccttcaccggctgttaaccctttattaaagtatgggcccaaagcagagataagccatattttcagggttccagagaagcttcctcctaaccatctctctcttgctttcttgggtcttctgcttttgccattgattggatttttggttgggctattgcgcttaggagtgaatctgaagaacttccccacgtcagcagttccagccacctttggtattctattccatgttggcattgcagcagttcttttgctctatgtgcttttctggctgaagttggatctatttacaaccctgaaatggcttggattgttgggagttttcttgctgtttgtggggcacaggatcctttcccatctcgcctctacatcatccaagcgaggggatcagggaagtagagaaaaagagttggtgaggaagagcaaggttttgttgtaccagggtcagtttgatatggggcggtttgatatgagatgtggcgtggttgcgaatgaggcttgggtgaagactgaaatgggaggggtacagaggtttctgttggcgggtaggagagtttggagattgggtggagaggttgctggttatgttcagacctgggagtgggatggtctcaccaaaactagttatttcctggacagacatcgtcttcacagctctcgccgtcttctcctcatctcctcgtcctctcttgctgccggaattagtaataagaaaggagttggaatctcattacttgctgatgaagaaacggcagtttcaagtttgagtgtacctttcctccccaaggatgcaagatggggtttagaatttgtgggatctagtaatgggttactttgttgcgttaccttgcttaagggtactcgaatagccacagtagtatggaacccagcaacagaccaatttaattattttcctattggtttggagaaaagagttgagaatgctacttactatcgtgtaatcataggttttgatttcatgcatagcattagtgcatacaagttggtgacagttcacccttgtgttaatcccattaatgatccgaaccaacttatttttcaagccagagtgttcaatcctagtagaaattcttggagagtagttgaaccgcaacttgaacttacatcatgtagaaggtttaatattcactctattactgtgaatggagtgctgtattggttggtagagaaacaaacagctggggtggcgctcgtttcgttcagtttacatgatgaggccttcaaggatacatggaaaccactaccaggagaaatagtacgctatcttactaagggtattttgttgaagatgcaattaattagatggaaaaattcagttgcagttgtaggctatctccggtgcaggagggcgaccaatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

1016

Amino Acids

111.81

Weight (kDa)

8.91

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_II	PF05817	30 - 300	4.9e-60	Ribophorin II N-terminal domain
Ribophorin_II_2nd	PF23861	308 - 415	4.2e-20	Ribophorin II second domain
Ribophorin_II_3rd	PF23860	422 - 545	2.3e-38	Ribophorin II third domain
Ribophorin_II_C	PF25147	578 - 678	8.7e-24	Ribophorin_II, C-terminal domain
FBA_3	PF08268	817 - 975	3.3e-11	F-box associated beta propeller domain
FBA_1	PF07734	827 - 974	3.3e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21150 AT4G21150 AT4G21150
fragaria_vesca	FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250
malus_domestica	MD05G1194900.v1.1 MD10G1181500.v1.1
prunus_persica	Prupe.8G221600_v2.0.a1
pyrus_communis	pycom05g18220
rosa_chinensis	RchiOBHm_Chr6g0287811
rosa_laevigata	RLG00000012466
rosa_multiflora	Rmu_sc0003335.1_g000010 Rmu_sc0003877.1_g000006 Rmu_sc0006738.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180780
rosa_rugosa	Rorug06G0191800 Rorug06G0191800
rosa_samantha	Rh6AG301700 Rh6BG307700
rosa_wichuraiana	Rw6G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	686
AccB7I	CCANNNNNTGG	2 cut(s)	1120, 1805
AccII	CGCG	1 cut(s)	737
AciI	CCGC	8 cut(s)	69, 108, 111, 735, 1666, 2128, 2210, 2777
AcoI	YGGCCR	1 cut(s)	1621
AcsI	RAATTY	6 cut(s)	824, 1275, 1499, 2474, 2755, 2998
AcuI	CTGAAG	3 cut(s)	1212, 1865, 1961
AcyI	GRCGYC	2 cut(s)	687, 776
AfaI	GTAC	9 cut(s)	450, 547, 991, 1284, 2105, 2193, 2439, 2527, 2946
AfiI	CCNNNNNNNGG	9 cut(s)	976, 1120, 1528, 1805, 1968, 2049, 2268, 2452, 2933
AflII	CTTAAG	1 cut(s)	2519
AhlI	ACTAGT	1 cut(s)	2288
AjiI	CACGTC	1 cut(s)	1860
AjnI	CCWGG	9 cut(s)	129, 796, 847, 1080, 1119, 2106, 2261, 2298, 2932
AjuI	GAANNNNNNNTTGG	2 cut(s)	2709, 2741
AleI	CACNNNNGTG	1 cut(s)	2688
AloI	GAACNNNNNNTCC	2 cut(s)	1076, 1108
Alw21I	GWGCWC	3 cut(s)	42, 123, 1012
Alw26I	GTCTC	4 cut(s)	495, 916, 1448, 2282
Ama87I	CYCGRG	4 cut(s)	23, 188, 1523, 1552
AoxI	GGCC	5 cut(s)	1224, 1621, 1659, 1706, 2904
ApaI	GGGCCC	1 cut(s)	1710
ApeKI	GCWGC	5 cut(s)	554, 767, 1375, 1907, 2360
ApoI	RAATTY	6 cut(s)	824, 1275, 1499, 2474, 2755, 2998
ArsI	GACNNNNNNTTYG	2 cut(s)	1387, 1419
AseI	ATTAAT	2 cut(s)	2703, 2984
Asp700I	GAANNNNTTC	2 cut(s)	1604, 1850
AspLEI	GCGC	6 cut(s)	218, 519, 689, 1380, 1830, 2878
AspS9I	GGNCC	3 cut(s)	1225, 1706, 1707
AsuHPI	GGTGA	8 cut(s)	92, 118, 1668, 2092, 2182, 2272, 2675, 2686
AsuII	TTCGAA	1 cut(s)	650
AvaI	CYCGRG	4 cut(s)	23, 188, 1523, 1552
BaeGI	GKGCMC	3 cut(s)	31, 1710, 2010
BaeI	ACNNNNGTAYC	2 cut(s)	2183, 2216
BalI	TGGCCA	1 cut(s)	1623
BamHI	GGATCC	2 cut(s)	134, 2013
BanI	GGYRCC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	123, 1710
BbsI	GAAGAC	5 cut(s)	1200, 1778, 2180, 2306, 2324
Bbv12I	GWGCWC	3 cut(s)	42, 123, 1012
BbvI	GCAGC	5 cut(s)	541, 779, 1362, 1919, 2347
BccI	CCATC	9 cut(s)	83, 461, 500, 677, 1770, 2031, 2267, 2457, 2985
BceAI	ACGGC	2 cut(s)	2313, 2433
BciT130I	CCWGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
BciVI	GTATCC	2 cut(s)	1103, 2908
BclI	TGATCA	2 cut(s)	613, 712
BcoDI	GTCTC	4 cut(s)	495, 916, 1448, 2282
BcuI	ACTAGT	1 cut(s)	2288
BfaI	CTAG	6 cut(s)	386, 543, 1514, 2289, 2487, 2748
BfmI	CTRYAG	2 cut(s)	520, 942
BfoI	RGCGCY	4 cut(s)	219, 520, 690, 2879
BfrI	CTTAAG	1 cut(s)	2519
BfuI	GTATCC	2 cut(s)	1103, 2908
BglII	AGATCT	1 cut(s)	1636
BisI	GCNGC	7 cut(s)	69, 111, 555, 768, 1376, 1908, 2361
BlsI	GCNGC	7 cut(s)	70, 112, 556, 769, 1377, 1909, 2362
Bme1390I	CCNGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
BmeT110I	CYCGRG	4 cut(s)	23, 188, 1523, 1552
BmgBI	CACGTC	1 cut(s)	1860
BmgT120I	GGNCC	3 cut(s)	1225, 1706, 1707
BmiI	GGNNCC	7 cut(s)	136, 688, 795, 1708, 1740, 2015, 2552
BmrFI	CCNGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	7 cut(s)	451, 608, 1023, 1051, 1576, 2446, 2967
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	5 cut(s)	1200, 1778, 2180, 2306, 2324
BpmI	CTGGAG	3 cut(s)	603, 1236, 1353
Bpu10I	CCTNAGC	1 cut(s)	1831
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	2 cut(s)	959, 1073
BsaAI	YACGTR	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	1635
BsaHI	GRCGYC	2 cut(s)	687, 776
BsaI	GGTCTC	3 cut(s)	916, 1448, 2282
BsaWI	WCCGGW	2 cut(s)	1247, 3024
Bsc4I	CCNNNNNNNGG	9 cut(s)	976, 1120, 1528, 1805, 1968, 2049, 2268, 2452, 2933
Bse118I	RCCGGY	1 cut(s)	1678
Bse1I	ACTGG	2 cut(s)	538, 1219
Bse3DI	GCAATG	3 cut(s)	339, 380, 1902
Bse8I	GATNNNNATC	1 cut(s)	1635
BseBI	CCWGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
BseGI	GGATG	7 cut(s)	331, 599, 649, 1129, 2039, 2278, 2461
BseJI	GATNNNNATC	1 cut(s)	1635
BseLI	CCNNNNNNNGG	9 cut(s)	976, 1120, 1528, 1805, 1968, 2049, 2268, 2452, 2933
BseMI	GCAATG	3 cut(s)	339, 380, 1902
BseMII	CTCAG	5 cut(s)	108, 161, 429, 485, 1644
BseNI	ACTGG	2 cut(s)	538, 1219
BseRI	GAGGAG	4 cut(s)	1002, 1005, 2327, 2335
BseSI	GKGCMC	3 cut(s)	31, 1710, 2010
BseXI	GCAGC	5 cut(s)	541, 779, 1362, 1919, 2347
BseYI	CCCAGC	2 cut(s)	2554, 2867
BsgI	GTGCAG	1 cut(s)	3049
Bsh1236I	CGCG	1 cut(s)	737
BshFI	GGCC	5 cut(s)	1226, 1623, 1661, 1708, 2906
BshNI	GGYRCC	1 cut(s)	686
BsiHKAI	GWGCWC	3 cut(s)	42, 123, 1012
BsiHKCI	CYCGRG	4 cut(s)	23, 188, 1523, 1552
BsiSI	CCGG	5 cut(s)	1248, 1491, 1679, 2364, 3025
BslFI	GGGAC	1 cut(s)	902
BslI	CCNNNNNNNGG	9 cut(s)	976, 1120, 1528, 1805, 1968, 2049, 2268, 2452, 2933
BsmAI	GTCTC	4 cut(s)	495, 916, 1448, 2282
BsmFI	GGGAC	1 cut(s)	902
BsmI	GAATGC	3 cut(s)	843, 1273, 2614
BsnI	GGCC	5 cut(s)	1226, 1623, 1661, 1708, 2906
Bso31I	GGTCTC	3 cut(s)	916, 1448, 2282
BsoBI	CYCGRG	4 cut(s)	23, 188, 1523, 1552
Bsp119I	TTCGAA	1 cut(s)	650
Bsp120I	GGGCCC	1 cut(s)	1706
Bsp1286I	GDGCHC	6 cut(s)	31, 42, 123, 1012, 1710, 2010
BspACI	CCGC	8 cut(s)	69, 108, 111, 735, 1666, 2128, 2210, 2777
BspANI	GGCC	5 cut(s)	1226, 1623, 1661, 1708, 2906
BspCNI	CTCAG	5 cut(s)	109, 162, 430, 486, 1645
BspFNI	CGCG	1 cut(s)	737
BspHI	TCATGA	1 cut(s)	1183
BspLI	GGNNCC	7 cut(s)	136, 688, 795, 1708, 1740, 2015, 2552
BspQI	GCTCTTC	2 cut(s)	128, 2081
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	2519
BspTNI	GGTCTC	3 cut(s)	916, 1448, 2282
BsrDI	GCAATG	3 cut(s)	339, 380, 1902
BsrFI	RCCGGY	1 cut(s)	1678
BsrI	ACTGG	2 cut(s)	538, 1219
BssAI	RCCGGY	1 cut(s)	1678
BssNI	GRCGYC	2 cut(s)	687, 776
BssT1I	CCWWGG	3 cut(s)	832, 1458, 2451
Bst2UI	CCWGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
Bst6I	CTCTTC	3 cut(s)	128, 147, 2081
BstACI	GRCGYC	2 cut(s)	687, 776
BstAFI	CTTAAG	1 cut(s)	2519
BstBAI	YACGTR	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	376, 1038, 1078
BstDEI	CTNAG	8 cut(s)	2, 117, 170, 438, 494, 1653, 1831, 2958
BstENI	CCTNNNNNAGG	1 cut(s)	2450
BstF5I	GGATG	7 cut(s)	331, 599, 649, 1129, 2039, 2278, 2461
BstFNI	CGCG	1 cut(s)	737
BstH2I	RGCGCY	4 cut(s)	219, 520, 690, 2879
BstHHI	GCGC	6 cut(s)	218, 519, 689, 1380, 1830, 2878
BstMAI	GTCTC	4 cut(s)	495, 916, 1448, 2282
BstNI	CCWGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
BstSCI	CCNGG	9 cut(s)	129, 796, 847, 1080, 1119, 2106, 2261, 2298, 2932
BstSFI	CTRYAG	2 cut(s)	520, 942
BstSLI	GKGCMC	3 cut(s)	31, 1710, 2010
BstUI	CGCG	1 cut(s)	737
BstV1I	GCAGC	5 cut(s)	541, 779, 1362, 1919, 2347
BstV2I	GAAGAC	5 cut(s)	1200, 1778, 2180, 2306, 2324
BstX2I	RGATCY	5 cut(s)	134, 1636, 1948, 2013, 2483
BstXI	CCANNNNNNTGG	1 cut(s)	506
BstYI	RGATCY	5 cut(s)	134, 1636, 1948, 2013, 2483
BsuI	GTATCC	2 cut(s)	1103, 2908
BsuRI	GGCC	5 cut(s)	1226, 1623, 1661, 1708, 2906
BtrI	CACGTC	1 cut(s)	1860
BtsCI	GGATG	7 cut(s)	331, 599, 649, 1129, 2039, 2278, 2461
BtsIMutI	CAGTG	2 cut(s)	670, 951
Cac8I	GCNNGC	3 cut(s)	376, 1038, 1078
CciI	TCATGA	1 cut(s)	1183
CfoI	GCGC	6 cut(s)	218, 519, 689, 1380, 1830, 2878
Cfr10I	RCCGGY	1 cut(s)	1678
Cfr13I	GGNCC	3 cut(s)	1225, 1706, 1707
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	9 cut(s)	449, 546, 990, 1283, 2104, 2192, 2438, 2526, 2945
CviAII	CATG	9 cut(s)	1115, 1184, 1412, 1451, 1895, 2647, 2796, 2897, 2919
CviQI	GTAC	9 cut(s)	449, 546, 990, 1283, 2104, 2192, 2438, 2526, 2945
DdeI	CTNAG	8 cut(s)	2, 117, 170, 438, 494, 1653, 1831, 2958
DinI	GGCGCC	1 cut(s)	688
EaeI	YGGCCR	1 cut(s)	1621
Eam1104I	CTCTTC	3 cut(s)	128, 147, 2081
EarI	CTCTTC	3 cut(s)	128, 147, 2081
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	832, 1458, 2451
Eco147I	AGGCCT	1 cut(s)	2906
Eco24I	GRGCYC	2 cut(s)	123, 1710
Eco31I	GGTCTC	3 cut(s)	916, 1448, 2282
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	3 cut(s)	1212, 1865, 1961
Eco88I	CYCGRG	4 cut(s)	23, 188, 1523, 1552
EcoICRI	GAGCTC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	2450
EcoRII	CCWGG	9 cut(s)	129, 796, 847, 1080, 1119, 2106, 2261, 2298, 2932
EcoT14I	CCWWGG	3 cut(s)	832, 1458, 2451
EcoT22I	ATGCAT	1 cut(s)	2652
EcoT38I	GRGCYC	2 cut(s)	123, 1710
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
ErhI	CCWWGG	3 cut(s)	832, 1458, 2451
FaeI	CATG	9 cut(s)	1118, 1187, 1415, 1454, 1898, 2650, 2799, 2900, 2922
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	9 cut(s)	1114, 1183, 1411, 1450, 1894, 2646, 2795, 2896, 2918
FauI	CCCGC	2 cut(s)	1673, 2203
FauNDI	CATATG	1 cut(s)	1470
FbaI	TGATCA	2 cut(s)	613, 712
Fnu4HI	GCNGC	7 cut(s)	69, 111, 555, 768, 1376, 1908, 2361
FokI	GGATG	7 cut(s)	338, 586, 656, 1136, 2026, 2285, 2468
FriOI	GRGCYC	2 cut(s)	123, 1710
Fsp4HI	GCNGC	7 cut(s)	69, 111, 555, 768, 1376, 1908, 2361
FspBI	CTAG	6 cut(s)	386, 543, 1514, 2289, 2487, 2748
GlaI	GCGC	6 cut(s)	217, 518, 688, 1379, 1829, 2877
GluI	GCNGC	7 cut(s)	69, 111, 555, 768, 1376, 1908, 2361
GsaI	CCCAGC	2 cut(s)	2558, 2871
GsuI	CTGGAG	3 cut(s)	603, 1236, 1353
HaeII	RGCGCY	4 cut(s)	219, 520, 690, 2879
HaeIII	GGCC	5 cut(s)	1226, 1623, 1661, 1708, 2906
HapII	CCGG	5 cut(s)	1248, 1491, 1679, 2364, 3025
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	6 cut(s)	218, 519, 689, 1380, 1830, 2878
Hin1I	GRCGYC	2 cut(s)	687, 776
Hin1II	CATG	9 cut(s)	1118, 1187, 1415, 1454, 1898, 2650, 2799, 2900, 2922
Hin6I	GCGC	6 cut(s)	216, 517, 687, 1378, 1828, 2876
HinP1I	GCGC	6 cut(s)	216, 517, 687, 1378, 1828, 2876
HincII	GTYRAC	3 cut(s)	295, 1534, 1687
HindII	GTYRAC	3 cut(s)	295, 1534, 1687
HindIII	AAGCTT	3 cut(s)	242, 653, 1748
HinfI	GANTC	7 cut(s)	95, 257, 718, 881, 1187, 1840, 2391
HpaI	GTTAAC	2 cut(s)	295, 1687
HpaII	CCGG	5 cut(s)	1248, 1491, 1679, 2364, 3025
HphI	GGTGA	8 cut(s)	92, 118, 1668, 2092, 2182, 2272, 2675, 2686
Hpy166II	GTNNAC	6 cut(s)	295, 1534, 1687, 2438, 2683, 2894
Hpy188III	TCNNGA	5 cut(s)	190, 348, 670, 1184, 1742
Hpy8I	GTNNAC	6 cut(s)	295, 1534, 1687, 2438, 2683, 2894
HpyAV	CCTTC	8 cut(s)	148, 316, 504, 1577, 1651, 1683, 2796, 2917
HpyCH4IV	ACGT	3 cut(s)	211, 776, 1859
HpyF3I	CTNAG	8 cut(s)	2, 117, 170, 438, 494, 1653, 1831, 2958
HpySE526I	ACGT	3 cut(s)	211, 776, 1859
Hsp92I	GRCGYC	2 cut(s)	687, 776
Hsp92II	CATG	9 cut(s)	1118, 1187, 1415, 1454, 1898, 2650, 2799, 2900, 2922
HspAI	GCGC	6 cut(s)	216, 517, 687, 1378, 1828, 2876
KasI	GGCGCC	1 cut(s)	686
Ksp22I	TGATCA	2 cut(s)	613, 712
KspAI	GTTAAC	2 cut(s)	295, 1687
LguI	GCTCTTC	2 cut(s)	128, 2081
LmnI	GCTCC	3 cut(s)	45, 268, 1015
Lsp1109I	GCAGC	5 cut(s)	541, 779, 1362, 1919, 2347
LweI	GCATC	7 cut(s)	451, 608, 1023, 1051, 1576, 2446, 2967
MaeI	CTAG	6 cut(s)	386, 543, 1514, 2289, 2487, 2748
MaeII	ACGT	3 cut(s)	211, 776, 1859
MaeIII	GTNAC	7 cut(s)	772, 1154, 1243, 1559, 2496, 2509, 2674
MfeI	CAATTG	1 cut(s)	1391
MflI	RGATCY	5 cut(s)	134, 1636, 1948, 2013, 2483
MhlI	GDGCHC	6 cut(s)	31, 42, 123, 1012, 1710, 2010
MlsI	TGGCCA	1 cut(s)	1623
MluNI	TGGCCA	1 cut(s)	1623
Mly113I	GGCGCC	1 cut(s)	687
MlyI	GAGTC	3 cut(s)	89, 727, 875
MmeI	TCCRAC	5 cut(s)	962, 1129, 1561, 1926, 2368
Mox20I	TGGCCA	1 cut(s)	1623
Mph1103I	ATGCAT	1 cut(s)	2652
MroXI	GAANNNNTTC	2 cut(s)	1604, 1850
MscI	TGGCCA	1 cut(s)	1623
MslI	CAYNNNNRTG	1 cut(s)	2688
Msp20I	TGGCCA	1 cut(s)	1623
MspA1I	CMGCKG	2 cut(s)	770, 2867
MspCI	CTTAAG	1 cut(s)	2519
MspI	CCGG	5 cut(s)	1248, 1491, 1679, 2364, 3025
MspR9I	CCNGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
MunI	CAATTG	1 cut(s)	1391
Mva1269I	GAATGC	3 cut(s)	843, 1273, 2614
MvaI	CCWGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
MvnI	CGCG	1 cut(s)	737
NarI	GGCGCC	1 cut(s)	687
NdeI	CATATG	1 cut(s)	1470
NlaIII	CATG	9 cut(s)	1118, 1187, 1415, 1454, 1898, 2650, 2799, 2900, 2922
NlaIV	GGNNCC	7 cut(s)	136, 688, 795, 1708, 1740, 2015, 2552
NmuCI	GTSAC	2 cut(s)	772, 2674
NsiI	ATGCAT	1 cut(s)	2652
NspV	TTCGAA	1 cut(s)	650
OliI	CACNNNNGTG	1 cut(s)	2688
PagI	TCATGA	1 cut(s)	1183
PasI	CCCWGGG	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	2906
PciSI	GCTCTTC	2 cut(s)	128, 2081
PctI	GAATGC	3 cut(s)	843, 1273, 2614
PdmI	GAANNNNTTC	2 cut(s)	1604, 1850
PfeI	GAWTC	4 cut(s)	257, 1187, 1840, 2391
PflFI	GACNNNGTC	2 cut(s)	665, 2310
PflMI	CCANNNNNTGG	2 cut(s)	1120, 1805
PfoI	TCCNGGA	2 cut(s)	1119, 2298
PkrI	GCNGC	7 cut(s)	70, 112, 556, 769, 1377, 1909, 2362
PleI	GAGTC	3 cut(s)	89, 726, 875
PluTI	GGCGCC	1 cut(s)	690
PpsI	GAGTC	3 cut(s)	89, 726, 875
Ppu21I	YACGTR	1 cut(s)	212
PshBI	ATTAAT	2 cut(s)	2703, 2984
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	9 cut(s)	129, 796, 847, 1080, 1119, 2106, 2261, 2298, 2932
PspFI	CCCAGC	2 cut(s)	2554, 2867
PspGI	CCWGG	9 cut(s)	129, 796, 847, 1080, 1119, 2106, 2261, 2298, 2932
PspN4I	GGNNCC	7 cut(s)	136, 688, 795, 1708, 1740, 2015, 2552
PspOMI	GGGCCC	1 cut(s)	1706
PspPI	GGNCC	3 cut(s)	1225, 1706, 1707
PsuI	RGATCY	5 cut(s)	134, 1636, 1948, 2013, 2483
PsyI	GACNNNGTC	2 cut(s)	665, 2310
PvuII	CAGCTG	2 cut(s)	770, 2867
RsaI	GTAC	9 cut(s)	450, 547, 991, 1284, 2105, 2193, 2439, 2527, 2946
RsaNI	GTAC	9 cut(s)	449, 546, 990, 1283, 2104, 2192, 2438, 2526, 2945
RseI	CAYNNNNRTG	1 cut(s)	2688
SacI	GAGCTC	1 cut(s)	123
SapI	GCTCTTC	2 cut(s)	128, 2081
SatI	GCNGC	7 cut(s)	69, 111, 555, 768, 1376, 1908, 2361
Sau96I	GGNCC	3 cut(s)	1225, 1706, 1707
SchI	GAGTC	3 cut(s)	89, 727, 875
ScrFI	CCNGG	9 cut(s)	131, 798, 849, 1082, 1121, 2108, 2263, 2300, 2934
SduI	GDGCHC	6 cut(s)	31, 42, 123, 1012, 1710, 2010
SfaNI	GCATC	7 cut(s)	451, 608, 1023, 1051, 1576, 2446, 2967
SfcI	CTRYAG	2 cut(s)	520, 942
SfoI	GGCGCC	1 cut(s)	688
SfuI	TTCGAA	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	2688
SmlI	CTYRAG	3 cut(s)	974, 1088, 2519
SmoI	CTYRAG	3 cut(s)	974, 1088, 2519
SpeI	ACTAGT	1 cut(s)	2288
SseBI	AGGCCT	1 cut(s)	2906
SsiI	CCGC	8 cut(s)	69, 108, 111, 735, 1666, 2128, 2210, 2777
SspDI	GGCGCC	1 cut(s)	686
SspI	AATATT	1 cut(s)	2812
SspMI	CTAG	6 cut(s)	386, 543, 1514, 2289, 2487, 2748
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	2906
StyD4I	CCNGG	9 cut(s)	129, 796, 847, 1080, 1119, 2106, 2261, 2298, 2932
StyI	CCWWGG	3 cut(s)	832, 1458, 2451
TaiI	ACGT	3 cut(s)	214, 779, 1862
TaqI	TCGA	5 cut(s)	141, 650, 669, 748, 2530
TatI	WGTACW	2 cut(s)	448, 1282
TauI	GCSGC	2 cut(s)	71, 113
TfiI	GAWTC	4 cut(s)	257, 1187, 1840, 2391
TscAI	CASTG	2 cut(s)	670, 951
TseFI	GTSAC	2 cut(s)	772, 2674
TseI	GCWGC	5 cut(s)	554, 767, 1375, 1907, 2360
Tsp45I	GTSAC	2 cut(s)	772, 2674
TspDTI	ATGAA	7 cut(s)	177, 582, 717, 942, 1172, 2424, 2635
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	2 cut(s)	670, 951
Tth111I	GACNNNGTC	2 cut(s)	665, 2310
Van91I	CCANNNNNTGG	2 cut(s)	1120, 1805
Vha464I	CTTAAG	1 cut(s)	2519
VspI	ATTAAT	2 cut(s)	2703, 2984
XagI	CCTNNNNNAGG	1 cut(s)	2450
XapI	RAATTY	6 cut(s)	824, 1275, 1499, 2474, 2755, 2998
XmnI	GAANNNNTTC	2 cut(s)	1604, 1850
XspI	CTAG	6 cut(s)	386, 543, 1514, 2289, 2487, 2748
ZraI	GACGTC	1 cut(s)	777
Zsp2I	ATGCAT	1 cut(s)	2652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.