Rmu_sc0004027.1_g000011

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004027.1
OG0004407
Physical Location & Seq
Reverse (-)
18196 .. 24035
5840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1632 bp
atggaagctgctgcatctaccactgcagttccatatcttgaaaaagttgattttctgaagcttcaaaatggcagtgatattcgaggtgttgctgttgctggggttgaaggagagccaatcaatttgactgaacctgtggcagaagcaatagcagctggttttgctgcatggttggcggaaaagaagaaggccgactctaaacgtttgagagtttctgttggccatgattctcgaatatctgcacaacagttagaggatgcaatttcacggggaattgctggtgctggtctggatgttgttcaatacggattggcatccacaccagcaatgtttaatagcacagttaccgaagatgatggtttcttatgtcctgccgatggggccataatgataacagcaagtcatttgccttacaacaggaatggattcaaattcttcacaaatgctggagggcttgggaaagctgacattaaaaacatcttagagcgtgctgcagatatatacaataagtttacagtggaaggtttgacaagttcaaaagaaaaggcacttgcttctgtgaagagagttgattatatgaacgtatatacatctgatcttgtaaaggcagttcgcaaagctgcaggaaatatagagaagccactggaaggattccatattgttgttgatgcagggaatggagcaggaggattttttgctgcaaaagtgcttgaacctcttggggcagtcacttctggtagtcagttcttggagccagatggtatgtttccaaaccatattccaaacccagaggacaaagcagccatgaaagctatcacccaggcagtccttgataacaaggctgatttagggatcatctttgatacagacgttgatagatctgctgctgtggactcttctggcaacgagttcaatcggaatcggctgattgccttgatgtctgccattgttcttgaggaacatcctggaacaactattgtcacagacagtgtcacctcagatggtcttaccacattcatcgagcagaaacttggggggaagcaccaccgtttcaaaagaggttacaaaaatgtcattgatgaagctattcgtttgaactctctgggtgaggaatcacatctggctattgaaactagtggccatggagctctcaaggaaaaccattggcttgatgatggtgcatacctcatggtcaaaattttaaataaacttgcctcagctagagcttcaggacatggtggtggcagcaaagttttgactgatcttttagaaggtttggaggaaccaggtttttcagtcgaactgagattaaagatcaatcaaagtcatcaagatcttaaaggaggatctttccgagactatggagaagcagtgttgaaacatttaggaaactatactgaatcgtatcctaagcttaaaaaagcccctgttaaccatgaaggggtacgagtttctggctatggtgggtggtttcttcttagactctcacttcacgatcctgtacttccccttaacatagaggcaccaagcaagagtgatgctgtatcacttggaaatgttgtgcgtgctgctctgacggagttctctgctttggatacatcttctttagataaatttgtccaagcatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

543

Amino Acids

58.05

Weight (kDa)

5.73

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGM_PMM_I PF02878 23 - 165 6.7e-26 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_II PF02879 200 - 301 8.8e-21 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_III PF02880 306 - 407 7.3e-10 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1522
AciI CCGC 1 cut(s) 176
AclI AACGTT 1 cut(s) 202
AclWI GGATC 3 cut(s) 860, 1354, 1490
AcoI YGGCCR 2 cut(s) 220, 1138
AcsI RAATTY 3 cut(s) 431, 1197, 1613
AcuI CTGAAG 2 cut(s) 77, 1212
AfaI GTAC 2 cut(s) 1446, 1503
AfiI CCNNNNNNNGG 3 cut(s) 377, 647, 1441
AhlI ACTAGT 1 cut(s) 1133
AjnI CCWGG 3 cut(s) 819, 964, 1285
Alw21I GWGCWC 1 cut(s) 1150
Alw26I GTCTC 1 cut(s) 1350
AlwI GGATC 3 cut(s) 860, 1354, 1490
AoxI GGCC 4 cut(s) 189, 220, 381, 1138
ApoI RAATTY 3 cut(s) 431, 1197, 1613
Asp700I GAANNNNTTC 2 cut(s) 425, 1086
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 808, 985, 1118
BaeI ACNNNNGTAYC 2 cut(s) 855, 888
BalI TGGCCA 2 cut(s) 222, 1140
BanI GGYRCC 1 cut(s) 1522
BanII GRGCYC 1 cut(s) 1150
Bbv12I GWGCWC 1 cut(s) 1150
BbvCI CCTCAGC 1 cut(s) 1216
BbvI GCAGC 9 cut(s) 151, 164, 478, 607, 685, 812, 871, 1257, 1555
BccI CCATC 5 cut(s) 350, 371, 752, 995, 1169
BciT130I CCWGG 3 cut(s) 821, 966, 1287
BciVI GTATCC 2 cut(s) 1416, 1588
BcoDI GTCTC 1 cut(s) 1350
BcuI ACTAGT 1 cut(s) 1133
BfaI CTAG 3 cut(s) 1134, 1221, 1630
BfmI CTRYAG 3 cut(s) 24, 492, 621
BfuI GTATCC 2 cut(s) 1416, 1588
BglI GCCNNNNNGGC 1 cut(s) 380
BglII AGATCT 2 cut(s) 878, 1333
Bme1390I CCNGG 3 cut(s) 821, 966, 1287
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 4 cut(s) 382, 753, 1284, 1524
BmrFI CCNGG 3 cut(s) 821, 966, 1287
BmsI GCATC 5 cut(s) 23, 247, 323, 658, 1528
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 2 cut(s) 1216, 1410
BpuEI CTTGAG 2 cut(s) 974, 1136
BsaBI GATNNNNATC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 819, 1141
BsaXI ACNNNNNCTCC 2 cut(s) 1356, 1386
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 647, 1441
Bse1I ACTGG 1 cut(s) 648
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 313
BseBI CCWGG 3 cut(s) 821, 966, 1287
BseDI CCNNGG 2 cut(s) 819, 1141
BseGI GGATG 5 cut(s) 262, 298, 314, 961, 1625
BseJI GATNNNNATC 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 377, 647, 1441
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 1011, 1230, 1295
BseNI ACTGG 1 cut(s) 648
BseXI GCAGC 9 cut(s) 151, 164, 478, 607, 685, 812, 871, 1257, 1555
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 4 cut(s) 191, 222, 383, 1140
BshNI GGYRCC 1 cut(s) 1522
BsiHKAI GWGCWC 1 cut(s) 1150
BslI CCNNNNNNNGG 3 cut(s) 377, 647, 1441
BsmAI GTCTC 1 cut(s) 1350
BsnI GGCC 4 cut(s) 191, 222, 383, 1140
Bsp1286I GDGCHC 1 cut(s) 1150
Bsp143I GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
Bsp19I CCATGG 1 cut(s) 1141
BspACI CCGC 1 cut(s) 176
BspANI GGCC 4 cut(s) 191, 222, 383, 1140
BspCNI CTCAG 3 cut(s) 1010, 1229, 1296
BspLI GGNNCC 4 cut(s) 382, 753, 1284, 1524
BspMAI CTGCAG 3 cut(s) 28, 496, 625
BspPI GGATC 3 cut(s) 860, 1354, 1490
BspT107I GGYRCC 1 cut(s) 1522
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 2 cut(s) 819, 1141
BssMI GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
BssT1I CCWWGG 1 cut(s) 1141
Bst2UI CCWGG 3 cut(s) 821, 966, 1287
Bst4CI ACNGT 5 cut(s) 249, 343, 517, 989, 1049
Bst6I CTCTTC 2 cut(s) 557, 901
BstC8I GCNNGC 2 cut(s) 489, 1566
BstDEI CTNAG 6 cut(s) 481, 997, 1216, 1304, 1410, 1478
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 5 cut(s) 262, 298, 314, 961, 1625
BstKTI GATC 8 cut(s) 598, 855, 881, 1264, 1317, 1336, 1349, 1498
BstMAI GTCTC 1 cut(s) 1350
BstMBI GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
BstMWI GCNNNNNNNGC 5 cut(s) 152, 161, 173, 380, 809
BstNI CCWGG 3 cut(s) 821, 966, 1287
BstSCI CCNGG 3 cut(s) 819, 964, 1285
BstSFI CTRYAG 3 cut(s) 24, 492, 621
BstV1I GCAGC 9 cut(s) 151, 164, 478, 607, 685, 812, 871, 1257, 1555
BstX2I RGATCY 3 cut(s) 878, 1333, 1346
BstYI RGATCY 3 cut(s) 878, 1333, 1346
BsuI GTATCC 2 cut(s) 1416, 1588
BsuRI GGCC 4 cut(s) 191, 222, 383, 1140
BtgI CCRYGG 1 cut(s) 1141
BtsCI GGATG 5 cut(s) 262, 298, 314, 961, 1625
BtsI GCAGTG 3 cut(s) 21, 79, 1377
BtsIMutI CAGTG 6 cut(s) 21, 79, 522, 641, 994, 1377
Cac8I GCNNGC 2 cut(s) 489, 1566
Cfr13I GGNCC 1 cut(s) 381
CsiI ACCWGGT 1 cut(s) 1285
Csp6I GTAC 2 cut(s) 1445, 1502
CviAII CATG 7 cut(s) 168, 224, 805, 1142, 1189, 1235, 1436
CviQI GTAC 2 cut(s) 1445, 1502
DdeI CTNAG 6 cut(s) 481, 997, 1216, 1304, 1410, 1478
DpnI GATC 8 cut(s) 597, 854, 880, 1263, 1316, 1335, 1348, 1497
DpnII GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
DraI TTTAAA 1 cut(s) 1203
EaeI YGGCCR 2 cut(s) 220, 1138
Eam1104I CTCTTC 2 cut(s) 557, 901
EarI CTCTTC 2 cut(s) 557, 901
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 1148
Eco130I CCWWGG 1 cut(s) 1141
Eco24I GRGCYC 1 cut(s) 1150
Eco53kI GAGCTC 1 cut(s) 1148
Eco57I CTGAAG 2 cut(s) 77, 1212
EcoICRI GAGCTC 1 cut(s) 1148
EcoRII CCWGG 3 cut(s) 819, 964, 1285
EcoT14I CCWWGG 1 cut(s) 1141
EcoT38I GRGCYC 1 cut(s) 1150
ErhI CCWWGG 1 cut(s) 1141
FaeI CATG 7 cut(s) 171, 227, 808, 1145, 1192, 1238, 1439
FatI CATG 7 cut(s) 167, 223, 804, 1141, 1188, 1234, 1435
FokI GGATG 5 cut(s) 269, 301, 305, 948, 1612
FriOI GRGCYC 1 cut(s) 1150
FspBI CTAG 3 cut(s) 1134, 1221, 1630
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 4 cut(s) 191, 222, 383, 1140
Hin1II CATG 7 cut(s) 171, 227, 808, 1145, 1192, 1238, 1439
HincII GTYRAC 1 cut(s) 1432
HindII GTYRAC 1 cut(s) 1432
HindIII AAGCTT 2 cut(s) 59, 1412
HinfI GANTC 9 cut(s) 194, 227, 426, 651, 893, 919, 1112, 1400, 1482
HpaI GTTAAC 1 cut(s) 1432
HphI GGTGA 3 cut(s) 808, 985, 1118
Hpy166II GTNNAC 3 cut(s) 513, 892, 1432
Hpy188I TCNGA 6 cut(s) 57, 595, 918, 1000, 1355, 1575
Hpy188III TCNNGA 7 cut(s) 38, 231, 290, 953, 1230, 1331, 1493
Hpy8I GTNNAC 3 cut(s) 513, 892, 1432
HpyAV CCTTC 6 cut(s) 101, 181, 515, 641, 1265, 1433
HpyCH4III ACNGT 5 cut(s) 249, 343, 517, 989, 1049
HpyCH4IV ACGT 3 cut(s) 202, 582, 870
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 161, 173, 380, 809
HpyF3I CTNAG 6 cut(s) 481, 997, 1216, 1304, 1410, 1478
HpySE526I ACGT 3 cut(s) 202, 582, 870
Hsp92II CATG 7 cut(s) 171, 227, 808, 1145, 1192, 1238, 1439
KspAI GTTAAC 1 cut(s) 1432
Kzo9I GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
LmnI GCTCC 3 cut(s) 680, 751, 1145
Lsp1109I GCAGC 9 cut(s) 151, 164, 478, 607, 685, 812, 871, 1257, 1555
LweI GCATC 5 cut(s) 23, 247, 323, 658, 1528
MabI ACCWGGT 1 cut(s) 1285
MaeI CTAG 3 cut(s) 1134, 1221, 1630
MaeII ACGT 3 cut(s) 202, 582, 870
MaeIII GTNAC 5 cut(s) 343, 727, 979, 991, 1061
MalI GATC 8 cut(s) 597, 854, 880, 1263, 1316, 1335, 1348, 1497
MboI GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
MboII GAAGA 7 cut(s) 196, 362, 427, 574, 888, 1466, 1593
MflI RGATCY 3 cut(s) 878, 1333, 1346
MhlI GDGCHC 1 cut(s) 1150
MlsI TGGCCA 2 cut(s) 222, 1140
MluCI AATT 6 cut(s) 121, 261, 273, 431, 1197, 1613
MluNI TGGCCA 2 cut(s) 222, 1140
MlyI GAGTC 3 cut(s) 188, 887, 1476
Mox20I TGGCCA 2 cut(s) 222, 1140
MroXI GAANNNNTTC 2 cut(s) 425, 1086
MscI TGGCCA 2 cut(s) 222, 1140
MseI TTAA 8 cut(s) 333, 471, 1202, 1310, 1338, 1416, 1431, 1512
MslI CAYNNNNRTG 1 cut(s) 1239
Msp20I TGGCCA 2 cut(s) 222, 1140
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 3 cut(s) 821, 966, 1287
MvaI CCWGG 3 cut(s) 821, 966, 1287
MwoI GCNNNNNNNGC 5 cut(s) 152, 161, 173, 380, 809
NcoI CCATGG 1 cut(s) 1141
NdeII GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
NlaIII CATG 7 cut(s) 171, 227, 808, 1145, 1192, 1238, 1439
NlaIV GGNNCC 4 cut(s) 382, 753, 1284, 1524
NmuCI GTSAC 3 cut(s) 727, 979, 991
PdmI GAANNNNTTC 2 cut(s) 425, 1086
PfeI GAWTC 6 cut(s) 227, 426, 651, 919, 1112, 1400
PflFI GACNNNGTC 1 cut(s) 989
PfoI TCCNGGA 1 cut(s) 964
PleI GAGTC 3 cut(s) 188, 887, 1476
PpsI GAGTC 3 cut(s) 188, 887, 1476
Psp124BI GAGCTC 1 cut(s) 1150
Psp1406I AACGTT 1 cut(s) 202
Psp6I CCWGG 3 cut(s) 819, 964, 1285
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 819, 964, 1285
PspN4I GGNNCC 4 cut(s) 382, 753, 1284, 1524
PspPI GGNCC 1 cut(s) 381
PsrI GAACNNNNNNTAC 2 cut(s) 594, 626
PstI CTGCAG 3 cut(s) 28, 496, 625
PsuI RGATCY 3 cut(s) 878, 1333, 1346
PsyI GACNNNGTC 1 cut(s) 989
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 1446, 1503
RsaNI GTAC 2 cut(s) 1445, 1502
RseI CAYNNNNRTG 1 cut(s) 1239
SacI GAGCTC 1 cut(s) 1150
SaqAI TTAA 8 cut(s) 333, 471, 1202, 1310, 1338, 1416, 1431, 1512
Sau3AI GATC 8 cut(s) 595, 852, 878, 1261, 1314, 1333, 1346, 1495
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 3 cut(s) 188, 887, 1476
ScrFI CCNGG 3 cut(s) 821, 966, 1287
SduI GDGCHC 1 cut(s) 1150
SexAI ACCWGGT 1 cut(s) 1285
SfaNI GCATC 5 cut(s) 23, 247, 323, 658, 1528
SfcI CTRYAG 3 cut(s) 24, 492, 621
SmiMI CAYNNNNRTG 1 cut(s) 1239
SmlI CTYRAG 2 cut(s) 953, 1151
SmoI CTYRAG 2 cut(s) 953, 1151
SpeI ACTAGT 1 cut(s) 1133
Sse9I AATT 6 cut(s) 121, 261, 273, 431, 1197, 1613
SsiI CCGC 1 cut(s) 176
SspMI CTAG 3 cut(s) 1134, 1221, 1630
SstI GAGCTC 1 cut(s) 1150
StyD4I CCNGG 3 cut(s) 819, 964, 1285
StyI CCWWGG 1 cut(s) 1141
TaaI ACNGT 5 cut(s) 249, 343, 517, 989, 1049
TaiI ACGT 3 cut(s) 205, 585, 873
TaqI TCGA 4 cut(s) 82, 232, 1020, 1299
TasI AATT 6 cut(s) 121, 261, 273, 431, 1197, 1613
TatI WGTACW 1 cut(s) 1501
TfiI GAWTC 6 cut(s) 227, 426, 651, 919, 1112, 1400
Tru1I TTAA 8 cut(s) 333, 471, 1202, 1310, 1338, 1416, 1431, 1512
Tru9I TTAA 8 cut(s) 333, 471, 1202, 1310, 1338, 1416, 1431, 1512
TscAI CASTG 6 cut(s) 28, 79, 522, 648, 994, 1377
TseFI GTSAC 3 cut(s) 727, 979, 991
Tsp45I GTSAC 3 cut(s) 727, 979, 991
TspDTI ATGAA 5 cut(s) 593, 821, 1006, 1095, 1452
TspGWI ACGGA 2 cut(s) 321, 1592
TspRI CASTG 6 cut(s) 28, 79, 522, 648, 994, 1377
Tth111I GACNNNGTC 1 cut(s) 989
XapI RAATTY 3 cut(s) 431, 1197, 1613
XmnI GAANNNNTTC 2 cut(s) 425, 1086
XspI CTAG 3 cut(s) 1134, 1221, 1630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.