Rmu_sc0004094.1_g000002

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004094.1
OG0009987
Physical Location & Seq
Reverse (-)
13852 .. 15035
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
atgaggatgatcagggggaggaggagatcacgaaaatgggaaggatcggccgaggggatgccgaaaaatgggttttccggccgggtcaccgatcggtggctgggatgccttcgatccaaggctggaggcagcggcggggcaaggcgacaccggagggcggttggacggcttgcggcgatcacaaaggtgtccgggtccggggccggtggagggccatttagccgggtcgggtcggacgagacccgaggcttccggcggctagggattgagaagctcagcattggcgacgtccagaggcttcagtgggaggagctcgaggccaagatccgaccgtggatacgccccgccaaggcctgcatcaggatcgtcttcgccagcgagaagaagctctgcgagcaaatcttccagggcatcggcaccgccatcgacgacgcctgcttcatggagaccgtcaagggcccggcgattcagctcttcaacttcgccgaggccatcagcatcagccgccgctcgccggagaagctcttcaagattctcgacttacatgacgctttgcttgacttgattcccgatgttgactctgttttcgaatccaagtcgtccgaaattgggtttctgcaattaaaggtgagggactgggttcgatgcttagatcacagaagtaaggtgatagaacttactttgaatttcttggatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

233

Amino Acids

26.06

Weight (kDa)

10.07

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 112 - 204 8.1e-23 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 510
AciI CCGC 9 cut(s) 132, 135, 158, 173, 256, 345, 420, 505, 508
AclWI GGATC 4 cut(s) 52, 108, 319, 371
AcoI YGGCCR 2 cut(s) 48, 79
AcsI RAATTY 1 cut(s) 685
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 2 cut(s) 288, 432
AfiI CCNNNNNNNGG 9 cut(s) 68, 96, 157, 198, 210, 349, 360, 514, 609
AgsI TTSAA 3 cut(s) 478, 529, 685
AjnI CCWGG 1 cut(s) 405
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 6 cut(s) 274, 313, 388, 472, 523, 699
AluI AGCT 6 cut(s) 274, 313, 388, 472, 523, 699
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 233, 440
AlwI GGATC 4 cut(s) 52, 108, 319, 371
Ama87I CYCGRG 2 cut(s) 243, 314
AoxI GGCC 8 cut(s) 48, 79, 201, 212, 318, 351, 457, 489
ApaI GGGCCC 1 cut(s) 461
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 685
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
Asp700I GAANNNNTTC 1 cut(s) 524
AspS9I GGNCC 5 cut(s) 195, 201, 212, 457, 458
AsuC2I CCSGG 5 cut(s) 83, 193, 199, 224, 461
AsuHPI GGTGA 3 cut(s) 79, 640, 679
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 2 cut(s) 243, 314
AvaII GGWCC 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 315, 461
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 431, 500
BceAI ACGGC 1 cut(s) 182
BcgI CGANNNNNNTGC 4 cut(s) 346, 380, 406, 440
BciT130I CCWGG 1 cut(s) 407
BciVI GTATCC 1 cut(s) 330
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 5 cut(s) 83, 193, 199, 224, 461
BcoDI GTCTC 2 cut(s) 233, 440
BfaI CTAG 2 cut(s) 260, 700
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 6 cut(s) 130, 133, 174, 257, 505, 508
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 6 cut(s) 131, 134, 175, 258, 506, 509
Bme1390I CCNGG 6 cut(s) 83, 193, 199, 224, 407, 461
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 2 cut(s) 243, 314
BmgT120I GGNCC 5 cut(s) 195, 201, 212, 457, 458
BmiI GGNNCC 4 cut(s) 196, 202, 418, 459
BmrFI CCNGG 6 cut(s) 83, 193, 199, 224, 407, 461
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 6 cut(s) 48, 95, 366, 420, 507, 635
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 5 cut(s) 83, 193, 199, 224, 461
BsaHI GRCGYC 2 cut(s) 288, 432
BsaI GGTCTC 2 cut(s) 233, 440
BsaJI CCNNGG 8 cut(s) 51, 117, 198, 244, 332, 348, 406, 486
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 9 cut(s) 68, 96, 157, 198, 210, 349, 360, 514, 609
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 8 cut(s) 51, 117, 198, 244, 332, 348, 406, 486
BseGI GGATG 3 cut(s) 12, 63, 110
BseLI CCNNNNNNNGG 9 cut(s) 68, 96, 157, 198, 210, 349, 360, 514, 609
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 3 cut(s) 34, 37, 323
BseSI GKGCMC 1 cut(s) 461
BseX3I CGGCCG 2 cut(s) 48, 79
BseXI GCAGC 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 100
Bsh1285I CGRYCG 4 cut(s) 51, 82, 94, 332
BshFI GGCC 8 cut(s) 50, 81, 203, 214, 320, 353, 459, 491
BshNI GGYRCC 1 cut(s) 416
BsiEI CGRYCG 4 cut(s) 51, 82, 94, 332
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 2 cut(s) 243, 314
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 9 cut(s) 68, 96, 157, 198, 210, 349, 360, 514, 609
BsmAI GTCTC 2 cut(s) 233, 440
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 8 cut(s) 50, 81, 203, 214, 320, 353, 459, 491
Bso31I GGTCTC 2 cut(s) 233, 440
BsoBI CYCGRG 2 cut(s) 243, 314
Bsp119I TTCGAA 1 cut(s) 588
Bsp120I GGGCCC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 315, 461
Bsp143I GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 9 cut(s) 132, 135, 158, 173, 256, 345, 420, 505, 508
BspANI GGCC 8 cut(s) 50, 81, 203, 214, 320, 353, 459, 491
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 4 cut(s) 196, 202, 418, 459
BspPI GGATC 4 cut(s) 52, 108, 319, 371
BspQI GCTCTTC 2 cut(s) 479, 530
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 2 cut(s) 233, 440
BsrBI CCGCTC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 8 cut(s) 51, 117, 198, 244, 332, 348, 406, 486
BssMI GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
BssNI GRCGYC 2 cut(s) 288, 432
BssT1I CCWWGG 2 cut(s) 117, 348
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 333, 451
Bst6I CTCTTC 2 cut(s) 479, 530
BstACI GRCGYC 2 cut(s) 288, 432
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 6 cut(s) 171, 355, 376, 395, 436, 512
BstDEI CTNAG 2 cut(s) 275, 649
BstDSI CCRYGG 1 cut(s) 332
BstEII GGTNACC 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 3 cut(s) 12, 63, 110
BstKTI GATC 9 cut(s) 12, 29, 47, 94, 116, 180, 327, 366, 655
BstMAI GTCTC 2 cut(s) 233, 440
BstMBI GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
BstMCI CGRYCG 4 cut(s) 51, 82, 94, 332
BstMWI GCNNNNNNNGC 3 cut(s) 394, 504, 520
BstNI CCWGG 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 6 cut(s) 81, 191, 197, 222, 405, 459
BstSLI GKGCMC 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BstZI CGGCCG 2 cut(s) 48, 79
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 8 cut(s) 50, 81, 203, 214, 320, 353, 459, 491
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 3 cut(s) 12, 63, 110
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 6 cut(s) 171, 355, 376, 395, 436, 512
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 195, 201, 212, 457, 458
CseI GACGC 2 cut(s) 440, 557
CviAII CATG 2 cut(s) 442, 545
DdeI CTNAG 2 cut(s) 275, 649
DpnI GATC 9 cut(s) 11, 28, 46, 93, 115, 179, 326, 365, 654
DpnII GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
EaeI YGGCCR 2 cut(s) 48, 79
EagI CGGCCG 2 cut(s) 48, 79
Eam1104I CTCTTC 2 cut(s) 479, 530
EarI CTCTTC 2 cut(s) 479, 530
Ecl136II GAGCTC 1 cut(s) 313
EclXI CGGCCG 2 cut(s) 48, 79
Eco130I CCWWGG 2 cut(s) 117, 348
Eco147I AGGCCT 1 cut(s) 353
Eco24I GRGCYC 2 cut(s) 315, 461
Eco31I GGTCTC 2 cut(s) 233, 440
Eco47I GGWCC 1 cut(s) 195
Eco52I CGGCCG 2 cut(s) 48, 79
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 2 cut(s) 243, 314
Eco91I GGTNACC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 117, 348
EcoT38I GRGCYC 2 cut(s) 315, 461
ErhI CCWWGG 2 cut(s) 117, 348
FaeI CATG 2 cut(s) 445, 548
FaiI YATR 2 cut(s) 443, 546
FaqI GGGAC 1 cut(s) 647
FatI CATG 2 cut(s) 441, 544
FauI CCCGC 2 cut(s) 128, 352
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 130, 133, 174, 257, 505, 508
FokI GGATG 3 cut(s) 19, 70, 117
FriOI GRGCYC 2 cut(s) 315, 461
Fsp4HI GCNGC 6 cut(s) 130, 133, 174, 257, 505, 508
FspBI CTAG 2 cut(s) 260, 700
GluI GCNGC 6 cut(s) 130, 133, 174, 257, 505, 508
GsaI CCCAGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 8 cut(s) 50, 81, 203, 214, 320, 353, 459, 491
HgaI GACGC 2 cut(s) 440, 557
Hin1I GRCGYC 2 cut(s) 288, 432
Hin1II CATG 2 cut(s) 445, 548
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 5 cut(s) 466, 532, 565, 578, 590
HphI GGTGA 3 cut(s) 79, 640, 679
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 3 cut(s) 235, 329, 604
Hpy188III TCNNGA 6 cut(s) 30, 292, 361, 529, 536, 569
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 3 cut(s) 290, 431, 434
HpyAV CCTTC 2 cut(s) 35, 119
HpyCH4III ACNGT 2 cut(s) 333, 451
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 357, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 504, 520
HpyF3I CTNAG 2 cut(s) 275, 649
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 2 cut(s) 288, 432
Hsp92II CATG 2 cut(s) 445, 548
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
LguI GCTCTTC 2 cut(s) 479, 530
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 6 cut(s) 48, 95, 366, 420, 507, 635
MaeI CTAG 2 cut(s) 260, 700
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 85
MalI GATC 9 cut(s) 11, 28, 46, 93, 115, 179, 326, 365, 654
MbiI CCGCTC 1 cut(s) 510
MboI GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
MboII GAAGA 5 cut(s) 361, 394, 394, 466, 517
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 2 cut(s) 315, 461
MluCI AATT 3 cut(s) 606, 620, 685
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 3 cut(s) 142, 213, 352
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 2 cut(s) 34, 185
MspA1I CMGCKG 1 cut(s) 132
MspR9I CCNGG 6 cut(s) 83, 193, 199, 224, 407, 461
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 394, 504, 520
NciI CCSGG 5 cut(s) 83, 193, 199, 224, 461
NdeII GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
NlaIII CATG 2 cut(s) 445, 548
NlaIV GGNNCC 4 cut(s) 196, 202, 418, 459
NmeAIII GCCGAG 2 cut(s) 76, 511
NmuCI GTSAC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 588
OliI CACNNNNGTG 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 353
PciSI GCTCTTC 2 cut(s) 479, 530
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 4 cut(s) 466, 532, 565, 590
PkrI GCNGC 6 cut(s) 131, 134, 175, 258, 506, 509
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 405
PspEI GGTNACC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 4 cut(s) 196, 202, 418, 459
PspOMI GGGCCC 1 cut(s) 457
PspPI GGNCC 5 cut(s) 195, 201, 212, 457, 458
PspXI VCTCGAGB 1 cut(s) 314
PsuI RGATCY 1 cut(s) 324
PvuI CGATCG 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 34, 185
SacI GAGCTC 1 cut(s) 315
SapI GCTCTTC 2 cut(s) 479, 530
SaqAI TTAA 1 cut(s) 623
SatI GCNGC 6 cut(s) 130, 133, 174, 257, 505, 508
Sau3AI GATC 9 cut(s) 9, 26, 44, 91, 113, 177, 324, 363, 652
Sau96I GGNCC 5 cut(s) 195, 201, 212, 457, 458
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 6 cut(s) 83, 193, 199, 224, 407, 461
SduI GDGCHC 2 cut(s) 315, 461
SfaNI GCATC 6 cut(s) 48, 95, 366, 420, 507, 635
Sfr274I CTCGAG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 588
SinI GGWCC 1 cut(s) 195
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 34, 185
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 3 cut(s) 606, 620, 685
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 9 cut(s) 132, 135, 158, 173, 256, 345, 420, 505, 508
SspMI CTAG 2 cut(s) 260, 700
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 6 cut(s) 81, 191, 197, 222, 405, 459
StyI CCWWGG 2 cut(s) 117, 348
TaaI ACNGT 2 cut(s) 333, 451
TaiI ACGT 1 cut(s) 291
TaqI TCGA 6 cut(s) 112, 315, 426, 537, 588, 643
TasI AATT 3 cut(s) 606, 620, 685
TauI GCSGC 5 cut(s) 135, 176, 259, 507, 510
TfiI GAWTC 4 cut(s) 466, 532, 565, 590
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 1 cut(s) 308
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 430
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 2 cut(s) 260, 700
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.