Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004125.1

Orthogroup ID

OG0018952

Physical Location & Seq

Genomic Coordinates Reverse (-)

77473 .. 80001

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggagctgtttggcttgggattgggatttgatggtggtaggatttttgaagaaggttttgagcaggttttccgggttgggttttccgatgtgggaatgattactgcttttggggttatgcagtttttgggttttgattttgggggcatggtggtcgtggatggagtggcgggtgtagagggcggcttcttcgaggtcgttgaggcggatgaagagctaacaagttttctgtgccataagaggctgaggaagatgatgaagagcacaactctgccaccatcgaactcaccgaggaaagttttcttcggttcggttacgactcttttcattaccgccgttctgaaaccggaactgtttttccgattcgattatgcattgttttcgatgaactgggtatttgagtatttttgggtttttgaattggggaagaacgaagaagtgaagaatagtttgatacttcgatatcgaaatcgctctgatcaaaatggggagtctgaacggttccttcggttccttatagttagaaaaatgcagaacgggaaccgaattgaaagctgtcaaaaggaaaagtggttagaggttttgggctgcggagtaacaaaacaagaaatattgaagagaagtggcaaaacagacaatgttgactgggctttcggacttggattggagcggctggcaatggttctatttggcatccctaatattgacaggacccgccccggatttcaccctgaaatccgaagaggccctgcggggcccaccttagaagaaattctaccaaaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

262

Amino Acids

29.89

Weight (kDa)

6.24

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	185 - 235	2.9e-12	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018952)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320341
rosa_laevigata	RLG00000018456 RLG00000023116
rosa_multiflora	Rmu_sc0004125.1_g000011
rosa_roxburghii	Rroxscaffold_7G00192370
rosa_rugosa	Rorug01G0346200
rosa_samantha	Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	8 cut(s)	170, 183, 206, 333, 591, 670, 715, 752
AcsI	RAATTY	2 cut(s)	771, 783
AgsI	TTSAA	4 cut(s)	50, 419, 551, 616
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	3 cut(s)	7, 217, 555
AluI	AGCT	3 cut(s)	7, 217, 555
Alw21I	GWGCWC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	745, 755
ApaI	GGGCCC	1 cut(s)	759
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	2 cut(s)	771, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
Asp700I	GAANNNNTTC	2 cut(s)	299, 771
AspS9I	GGNCC	4 cut(s)	711, 746, 755, 756
AsuC2I	CCSGG	2 cut(s)	74, 720
AsuHPI	GGTGA	2 cut(s)	279, 719
AvaII	GGWCC	1 cut(s)	711
BaeGI	GKGCMC	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	759
BarI	GAAGNNNNNNTAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	266
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	26, 155, 286
BceAI	ACGGC	1 cut(s)	320
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 363, 397
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	74, 720
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	3 cut(s)	184, 589, 671
BlsI	GCNGC	3 cut(s)	185, 590, 672
Bme1390I	CCNGG	2 cut(s)	74, 720
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	4 cut(s)	711, 746, 755, 756
BmiI	GGNNCC	6 cut(s)	503, 512, 542, 713, 756, 757
BmrFI	CCNGG	2 cut(s)	74, 720
BmrI	ACTGGG	2 cut(s)	400, 655
BmsI	GCATC	1 cut(s)	702
BmuI	ACTGGG	2 cut(s)	400, 655
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu10I	CCTNAGC	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	74, 720
BsaJI	CCNNGG	2 cut(s)	290, 718
BsaWI	WCCGGW	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	395, 650
Bse3DI	GCAATG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	290, 718
BseGI	GGATG	3 cut(s)	166, 214, 693
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	395, 650
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	2 cut(s)	747, 757
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	73, 347, 720
BsnI	GGCC	2 cut(s)	747, 757
Bsp120I	GGGCCC	1 cut(s)	755
Bsp1286I	GDGCHC	2 cut(s)	266, 759
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	8 cut(s)	170, 183, 206, 333, 591, 670, 715, 752
BspANI	GGCC	2 cut(s)	747, 757
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	6 cut(s)	503, 512, 542, 713, 756, 757
BspMI	ACCTGC	1 cut(s)	55
BspQI	GCTCTTC	2 cut(s)	207, 254
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	395, 650
BssECI	CCNNGG	2 cut(s)	290, 718
BssMI	GATC	1 cut(s)	478
Bst4CI	ACNGT	2 cut(s)	354, 501
Bst6I	CTCTTC	4 cut(s)	207, 254, 611, 736
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	2 cut(s)	245, 763
BstF5I	GGATG	3 cut(s)	166, 214, 693
BstKTI	GATC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	72, 718
BstSLI	GKGCMC	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	747, 757
BtsCI	GGATG	3 cut(s)	166, 214, 693
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	675
Cfr13I	GGNCC	4 cut(s)	711, 746, 755, 756
CviAII	CATG	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	245, 763
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	207, 254, 611, 736
EarI	CTCTTC	4 cut(s)	207, 254, 611, 736
EciI	GGCGGA	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	759
Eco32I	GATATC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	711
EcoO109I	RGGNCCY	3 cut(s)	711, 746, 755
EcoRV	GATATC	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	1 cut(s)	151
FaiI	YATR	5 cut(s)	119, 149, 237, 372, 518
FatI	CATG	1 cut(s)	147
FauI	CCCGC	3 cut(s)	163, 722, 745
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	184, 589, 671
FokI	GGATG	3 cut(s)	173, 221, 680
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	3 cut(s)	184, 589, 671
GluI	GCNGC	3 cut(s)	184, 589, 671
HaeIII	GGCC	2 cut(s)	747, 757
HapII	CCGG	3 cut(s)	73, 347, 720
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	319, 363, 491
HpaII	CCGG	3 cut(s)	73, 347, 720
HphI	GGTGA	2 cut(s)	279, 719
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	7 cut(s)	88, 342, 362, 478, 496, 656, 740
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	2 cut(s)	47, 515
HpyCH4III	ACNGT	2 cut(s)	354, 501
HpyCH4V	TGCA	3 cut(s)	121, 374, 532
HpyF3I	CTNAG	2 cut(s)	245, 763
Hsp92II	CATG	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	2 cut(s)	207, 254
LmnI	GCTCC	2 cut(s)	4, 667
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	313, 595
MalI	GATC	1 cut(s)	480
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	1 cut(s)	478
MhlI	GDGCHC	2 cut(s)	266, 759
MluCI	AATT	4 cut(s)	419, 546, 771, 783
MlyI	GAGTC	2 cut(s)	313, 500
MnlI	CCTC	8 cut(s)	172, 187, 196, 234, 240, 285, 571, 737
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	2 cut(s)	299, 771
MspI	CCGG	3 cut(s)	73, 347, 720
MspR9I	CCNGG	2 cut(s)	74, 720
NciI	CCSGG	2 cut(s)	74, 720
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	6 cut(s)	503, 512, 542, 713, 756, 757
NsiI	ATGCAT	1 cut(s)	376
PciSI	GCTCTTC	2 cut(s)	207, 254
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PdmI	GAANNNNTTC	2 cut(s)	299, 771
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	185, 590, 672
PleI	GAGTC	2 cut(s)	313, 499
PpsI	GAGTC	2 cut(s)	313, 499
PpuMI	RGGWCCY	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	711
PspN4I	GGNNCC	6 cut(s)	503, 512, 542, 713, 756, 757
PspOMI	GGGCCC	1 cut(s)	755
PspPI	GGNCC	4 cut(s)	711, 746, 755, 756
PspPPI	RGGWCCY	1 cut(s)	711
SapI	GCTCTTC	2 cut(s)	207, 254
SatI	GCNGC	3 cut(s)	184, 589, 671
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	4 cut(s)	711, 746, 755, 756
SchI	GAGTC	2 cut(s)	313, 500
ScrFI	CCNGG	2 cut(s)	74, 720
SduI	GDGCHC	2 cut(s)	266, 759
SetI	ASST	8 cut(s)	9, 58, 69, 198, 219, 557, 582, 764
SfaNI	GCATC	1 cut(s)	702
SinI	GGWCC	1 cut(s)	711
Sse9I	AATT	4 cut(s)	419, 546, 771, 783
SsiI	CCGC	8 cut(s)	170, 183, 206, 333, 591, 670, 715, 752
SspI	AATATT	2 cut(s)	612, 703
StyD4I	CCNGG	2 cut(s)	72, 718
TaaI	ACNGT	2 cut(s)	354, 501
TaqI	TCGA	6 cut(s)	192, 281, 366, 383, 460, 466
TasI	AATT	4 cut(s)	419, 546, 771, 783
TauI	GCSGC	2 cut(s)	186, 673
TfiI	GAWTC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	588
TspDTI	ATGAA	4 cut(s)	225, 272, 316, 401
VpaK11BI	GGWCC	1 cut(s)	711
XapI	RAATTY	2 cut(s)	771, 783
XmnI	GAANNNNTTC	2 cut(s)	299, 771
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.