Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004386.1

Orthogroup ID

OG0018255

Physical Location & Seq

Genomic Coordinates Reverse (-)

94864 .. 99339

Gene Structure 4476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004386.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggcggcggaccaccaacgttcaaatggtctcggtgtcttgatcacgtctatggttcggggactgagccatgccggtgaacctaccgatgagctatccggtcagttcgagctccggctccggctggagccacaaggaatccgactctccaatactacgcactccgaagtcgctccttgcttgcctctgccttcccttccgatgctctgtggcacctccggtcaggaactccggttgttcgatgagccgagtcagagtaggattgctgatctgcttcgtgctactgacgtctcttgcttgaagctgagggaggatactgcggtagttcaatatggctacgtccaacctatgaatcttcacgatgaagttttacagtacaatccagaagcctttcagtacaccactccagaaaaagttggggcccacagacgccggcctgcggagacagatgaagtgaatctaagtgatatggatgcatgttccttcaggttaaggttgcggagtaccgagtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

171

Amino Acids

19.07

Weight (kDa)

5.21

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018255)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000388.1_g000053 Rmu_sc0004386.1_g000027 Rmu_sc0006428.1_g000015 Rmu_sc0006959.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032030
rosa_samantha	Rh1BG198400 Rh1DG226300 Rh4DG145600 Rh6BG129900 Rh6CG128200 Rh6DG115300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	5 cut(s)	5, 8, 320, 440, 499
AclI	AACGTT	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	469
AcyI	GRCGYC	2 cut(s)	288, 430
AfaI	GTAC	3 cut(s)	377, 398, 505
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	24, 301, 329
AjiI	CACGTC	1 cut(s)	48
AluBI	AGCT	3 cut(s)	94, 112, 304
AluI	AGCT	3 cut(s)	94, 112, 304
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	3 cut(s)	35, 295, 437
AoxI	GGCC	2 cut(s)	420, 434
ApaI	GGGCCC	1 cut(s)	424
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	10, 420, 421
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	114, 424
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	307
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	35, 295, 437
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	10, 420, 421
BmiI	GGNNCC	5 cut(s)	119, 129, 214, 421, 422
BmsI	GCATC	2 cut(s)	192, 463
BpmI	CTGGAG	2 cut(s)	146, 390
Bpu10I	CCTNAGC	1 cut(s)	305
BsaHI	GRCGYC	2 cut(s)	288, 430
BsaI	GGTCTC	1 cut(s)	35
BsaWI	WCCGGW	3 cut(s)	98, 218, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	2 cut(s)	74, 432
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	56, 296
BseSI	GKGCMC	1 cut(s)	424
BshFI	GGCC	2 cut(s)	422, 436
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	7 cut(s)	75, 99, 115, 121, 219, 232, 433
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	3 cut(s)	35, 295, 437
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	422, 436
Bso31I	GGTCTC	1 cut(s)	35
Bsp120I	GGGCCC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	114, 424
Bsp143I	GATC	2 cut(s)	42, 268
BspACI	CCGC	5 cut(s)	5, 8, 320, 440, 499
BspANI	GGCC	2 cut(s)	422, 436
BspCNI	CTCAG	2 cut(s)	57, 297
BspLI	GGNNCC	5 cut(s)	119, 129, 214, 421, 422
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	74, 432
BssAI	RCCGGY	2 cut(s)	74, 432
BssMI	GATC	2 cut(s)	42, 268
BssNI	GRCGYC	2 cut(s)	288, 430
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	2 cut(s)	288, 430
BstC8I	GCNNGC	3 cut(s)	182, 434, 438
BstDEI	CTNAG	3 cut(s)	65, 305, 461
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	45, 271
BstMAI	GTCTC	3 cut(s)	35, 295, 437
BstMBI	GATC	2 cut(s)	42, 268
BstNSI	RCATGY	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	422, 436
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	182, 434, 438
Cfr10I	RCCGGY	2 cut(s)	74, 432
Cfr13I	GGNCC	3 cut(s)	10, 420, 421
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	376, 397, 504
CviAII	CATG	2 cut(s)	71, 477
CviQI	GTAC	3 cut(s)	376, 397, 504
DdeI	CTNAG	3 cut(s)	65, 305, 461
DpnI	GATC	2 cut(s)	44, 270
DpnII	GATC	2 cut(s)	42, 268
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	114, 424
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	114, 424
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	2 cut(s)	74, 480
FaiI	YATR	6 cut(s)	53, 72, 333, 350, 470, 478
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	2 cut(s)	70, 476
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	2 cut(s)	114, 424
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	2 cut(s)	146, 390
HaeIII	GGCC	2 cut(s)	422, 436
HapII	CCGG	7 cut(s)	75, 99, 115, 121, 219, 232, 433
HgaI	GACGC	1 cut(s)	438
Hin1I	GRCGYC	2 cut(s)	288, 430
Hin1II	CATG	2 cut(s)	74, 480
HinfI	GANTC	6 cut(s)	138, 144, 250, 352, 457, 509
HpaII	CCGG	7 cut(s)	75, 99, 115, 121, 219, 232, 433
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	80, 399
Hpy188I	TCNGA	4 cut(s)	143, 166, 201, 255
Hpy188III	TCNNGA	6 cut(s)	40, 224, 359, 383, 407, 513
Hpy8I	GTNNAC	2 cut(s)	80, 399
HpyAV	CCTTC	3 cut(s)	201, 206, 493
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	4 cut(s)	19, 47, 288, 339
HpyCH4V	TGCA	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	65, 305, 461
HpySE526I	ACGT	4 cut(s)	19, 47, 288, 339
Hsp92I	GRCGYC	2 cut(s)	288, 430
Hsp92II	CATG	2 cut(s)	74, 480
KroI	GCCGGC	1 cut(s)	432
KroNI	GCCGGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 268
LmnI	GCTCC	4 cut(s)	117, 123, 127, 178
LweI	GCATC	2 cut(s)	192, 463
MaeII	ACGT	4 cut(s)	19, 47, 288, 339
MalI	GATC	2 cut(s)	44, 270
MboI	GATC	2 cut(s)	42, 268
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	114, 424
MlyI	GAGTC	2 cut(s)	138, 259
MmeI	TCCRAC	2 cut(s)	166, 367
MnlI	CCTC	4 cut(s)	195, 226, 300, 304
Mph1103I	ATGCAT	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	2 cut(s)	50, 75
MspI	CCGG	7 cut(s)	75, 99, 115, 121, 219, 232, 433
NaeI	GCCGGC	1 cut(s)	434
NdeII	GATC	2 cut(s)	42, 268
NgoMIV	GCCGGC	1 cut(s)	432
NlaIII	CATG	2 cut(s)	74, 480
NlaIV	GGNNCC	5 cut(s)	119, 129, 214, 421, 422
NmeAIII	GCCGAG	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	138, 352, 457
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	138, 258
PpsI	GAGTC	2 cut(s)	138, 258
Psp124BI	GAGCTC	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	19
PspN4I	GGNNCC	5 cut(s)	119, 129, 214, 421, 422
PspOMI	GGGCCC	1 cut(s)	420
PspPI	GGNCC	3 cut(s)	10, 420, 421
RsaI	GTAC	3 cut(s)	377, 398, 505
RsaNI	GTAC	3 cut(s)	376, 397, 504
RseI	CAYNNNNRTG	2 cut(s)	50, 75
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	42, 268
Sau96I	GGNCC	3 cut(s)	10, 420, 421
SchI	GAGTC	2 cut(s)	138, 259
SduI	GDGCHC	2 cut(s)	114, 424
SfaNI	GCATC	2 cut(s)	192, 463
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	50, 75
SsiI	CCGC	5 cut(s)	5, 8, 320, 440, 499
SstI	GAGCTC	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	4 cut(s)	22, 50, 291, 342
TaqI	TCGA	2 cut(s)	108, 240
TatI	WGTACW	2 cut(s)	375, 396
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	138, 352, 457
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	365, 378, 465
VpaK11BI	GGWCC	1 cut(s)	10
XceI	RCATGY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	390
ZraI	GACGTC	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.