Rroxscaffold_1G00032030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018255
Physical Location & Seq
Reverse (-)
45521576 .. 45521989
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032030.1

Sequence Viewer

Length: 414 bp
ATGTGGAGGCGGACCACCAACGTTCCAATGGTCTCGGTGTCTCGATCACGTCTATGGTTCGGGTTTTCACGAGAAGCTCGGATGAAGTCGAATCGAAGCCGAAGTCTCAAGCTTTCGGGCGAGCTTTCGGGAATTTTCCGACGAATTCGGCTAGGACCGAGCCATGCGGGTGAACCTACCGATGAGCTATCCGGTCGGTTCGAGCTCCGGCTCCAGTGGAGCCACAAGCCATCCGACTCTCCAATACTATGCACTCGAAGTCACTCCTTGCTTGCCTCTCGCGCCTTCCCTTCCGATGCTCGCGGCGCCTCCGATCGGGAACTCGGTTGTTCGATGTGCCGAGTCGGAGTAGGATTGCTGATCCGCTTCGTGCTACCGACGTCTCTTGCTTGTAAGTGTGCTATTTGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.3

Weight (kDa)

11.14

Isoelectric Point (pI)

58.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 305
AccII CGCG 2 cut(s) 282, 303
AciI CCGC 4 cut(s) 10, 167, 303, 364
AclI AACGTT 1 cut(s) 21
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 2 cut(s) 132, 144
AcyI GRCGYC 2 cut(s) 306, 380
AfiI CCNNNNNNNGG 1 cut(s) 315
AjiI CACGTC 1 cut(s) 50
AluBI AGCT 5 cut(s) 77, 112, 124, 187, 205
AluI AGCT 5 cut(s) 77, 112, 124, 187, 205
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 4 cut(s) 37, 45, 110, 387
AlwI GGATC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 132, 144
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AspLEI GCGC 2 cut(s) 284, 308
AspS9I GGNCC 2 cut(s) 12, 155
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 12, 155
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 238
BcoDI GTCTC 4 cut(s) 37, 45, 110, 387
BfaI CTAG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme18I GGWCC 2 cut(s) 12, 155
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 12, 155
BmiI GGNNCC 3 cut(s) 212, 221, 307
BmsI GCATC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 92
BsaHI GRCGYC 2 cut(s) 306, 380
BsaI GGTCTC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 87, 230
BseLI CCNNNNNNNGG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 282, 303
Bsh1285I CGRYCG 2 cut(s) 196, 316
BshNI GGYRCC 1 cut(s) 305
BsiEI CGRYCG 2 cut(s) 196, 316
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 192, 208
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 4 cut(s) 37, 45, 110, 387
BsmBI CGTCTC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 44, 313, 360
BspACI CCGC 4 cut(s) 10, 167, 303, 364
BspFNI CGCG 2 cut(s) 282, 303
BspLI GGNNCC 3 cut(s) 212, 221, 307
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 214
BssMI GATC 3 cut(s) 44, 313, 360
BssNI GRCGYC 2 cut(s) 306, 380
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
BstACI GRCGYC 2 cut(s) 306, 380
BstC8I GCNNGC 3 cut(s) 122, 273, 301
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 87, 230
BstFNI CGCG 2 cut(s) 282, 303
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 284, 308
BstKTI GATC 3 cut(s) 47, 316, 363
BstMAI GTCTC 4 cut(s) 37, 45, 110, 387
BstMBI GATC 3 cut(s) 44, 313, 360
BstMCI CGRYCG 2 cut(s) 196, 316
BstMWI GCNNNNNNNGC 2 cut(s) 281, 305
BstUI CGCG 2 cut(s) 282, 303
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 87, 230
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 3 cut(s) 122, 273, 301
CfoI GCGC 2 cut(s) 284, 308
Cfr13I GGNCC 2 cut(s) 12, 155
CviAII CATG 1 cut(s) 164
DdeI CTNAG 1 cut(s) 411
DinI GGCGCC 1 cut(s) 307
DpnI GATC 3 cut(s) 46, 315, 362
DpnII GATC 3 cut(s) 44, 313, 360
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 12, 155
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 307
EheI GGCGCC 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 1 cut(s) 167
FaiI YATR 3 cut(s) 55, 165, 250
FatI CATG 1 cut(s) 163
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 304
FokI GGATG 2 cut(s) 94, 217
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 304
FspBI CTAG 1 cut(s) 152
GlaI GCGC 2 cut(s) 283, 307
GluI GCNGC 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 309
HapII CCGG 2 cut(s) 192, 208
HhaI GCGC 2 cut(s) 284, 308
Hin1I GRCGYC 2 cut(s) 306, 380
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 2 cut(s) 282, 306
HinP1I GCGC 2 cut(s) 282, 306
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 91, 236, 342
HpaII CCGG 2 cut(s) 192, 208
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 6 cut(s) 81, 140, 235, 295, 313, 347
Hpy188III TCNNGA 4 cut(s) 42, 69, 129, 317
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 2 cut(s) 144, 382
HpyAV CCTTC 2 cut(s) 295, 300
HpyCH4IV ACGT 3 cut(s) 21, 49, 380
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 305
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 3 cut(s) 21, 49, 380
Hsp92I GRCGYC 2 cut(s) 306, 380
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 2 cut(s) 282, 306
KasI GGCGCC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 44, 313, 360
LmnI GCTCC 3 cut(s) 210, 216, 219
LpnPI CCDG 3 cut(s) 205, 221, 227
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 152
MaeII ACGT 3 cut(s) 21, 49, 380
MaeIII GTNAC 1 cut(s) 260
MalI GATC 3 cut(s) 46, 315, 362
MboI GATC 3 cut(s) 44, 313, 360
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 132, 144
Mly113I GGCGCC 1 cut(s) 306
MlyI GAGTC 2 cut(s) 230, 351
MmeI TCCRAC 3 cut(s) 163, 258, 325
MnlI CCTC 2 cut(s) 286, 319
MslI CAYNNNNRTG 2 cut(s) 52, 168
MspI CCGG 2 cut(s) 192, 208
MvnI CGCG 2 cut(s) 282, 303
MwoI GCNNNNNNNGC 2 cut(s) 281, 305
NarI GGCGCC 1 cut(s) 306
NdeII GATC 3 cut(s) 44, 313, 360
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 3 cut(s) 212, 221, 307
NmeAIII GCCGAG 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 305
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 2 cut(s) 230, 350
PluTI GGCGCC 1 cut(s) 309
PpsI GAGTC 2 cut(s) 230, 350
Psp124BI GAGCTC 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 212, 221, 307
PspPI GGNCC 2 cut(s) 12, 155
PvuI CGATCG 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 52, 168
SacI GAGCTC 1 cut(s) 207
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 3 cut(s) 44, 313, 360
Sau96I GGNCC 2 cut(s) 12, 155
SchI GAGTC 2 cut(s) 230, 351
SduI GDGCHC 1 cut(s) 207
SetI ASST 9 cut(s) 24, 52, 79, 114, 126, 178, 189, 207, 383
SfaNI GCATC 1 cut(s) 286
SfoI GGCGCC 1 cut(s) 307
SinI GGWCC 2 cut(s) 12, 155
SmiMI CAYNNNNRTG 2 cut(s) 52, 168
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 132, 144
SsiI CCGC 4 cut(s) 10, 167, 303, 364
SspDI GGCGCC 1 cut(s) 305
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 207
TaiI ACGT 3 cut(s) 24, 52, 383
TaqI TCGA 6 cut(s) 43, 89, 94, 201, 256, 332
TaqII GACCGA 1 cut(s) 172
TasI AATT 2 cut(s) 132, 144
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 12, 155
XapI RAATTY 2 cut(s) 132, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 152
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.