Rmu_sc0006959.1_g000020

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006959.1
OG0018255
Physical Location & Seq
Forward (+)
77802 .. 78586
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006959.1_g000020.1.cds

Sequence Viewer

Length: 360 bp
atgcagaggccgaccaccaacgttcgaatggtctcggtgtctcaatcacgtctatggttcaggttttcacagagaagctcagatgaagttgaatcgaagccggaagtctcaagctttccggacctttggttgtttgatgagccgagtcggagcagtgcaaggttgaattactacgacgccgttcaggccagtaggattgctgatctgcttcttgctactgacgtctcttgcttgaagctgagggaggatattgcggcagtccaatatggctatgtccaacctatgattcttcatgatgaagttttacagtacaatccagaggtctttcagtacaccactccaggtaaacgaagtatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

119

Amino Acids

13.77

Weight (kDa)

5.34

Isoelectric Point (pI)

63.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 254
AclI AACGTT 1 cut(s) 21
AcyI GRCGYC 2 cut(s) 177, 222
AfaI GTAC 2 cut(s) 311, 332
AgsI TTSAA 3 cut(s) 92, 166, 235
AjiI CACGTC 1 cut(s) 50
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 3 cut(s) 78, 114, 238
AluI AGCT 3 cut(s) 78, 114, 238
Alw26I GTCTC 4 cut(s) 37, 45, 112, 229
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 2 cut(s) 8, 186
AspS9I GGNCC 1 cut(s) 121
AsuII TTCGAA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 4 cut(s) 37, 45, 112, 229
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 94
BsaHI GRCGYC 2 cut(s) 177, 222
BsaI GGTCTC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 93, 230
BseNI ACTGG 1 cut(s) 189
BshFI GGCC 2 cut(s) 10, 188
BsiSI CCGG 2 cut(s) 101, 119
BsmAI GTCTC 4 cut(s) 37, 45, 112, 229
BsmBI CGTCTC 1 cut(s) 229
BsnI GGCC 2 cut(s) 10, 188
Bso31I GGTCTC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 25
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 10, 188
BspCNI CTCAG 2 cut(s) 92, 231
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 189
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 2 cut(s) 177, 222
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 309
BstACI GRCGYC 2 cut(s) 177, 222
BstBI TTCGAA 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 79, 239
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 4 cut(s) 37, 45, 112, 229
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BsuRI GGCC 2 cut(s) 10, 188
BtrI CACGTC 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 310, 331
CviAII CATG 1 cut(s) 293
CviJI RGCY 8 cut(s) 10, 78, 100, 114, 142, 188, 238, 270
CviKI_1 RGCY 8 cut(s) 10, 78, 100, 114, 142, 188, 238, 270
CviQI GTAC 2 cut(s) 310, 331
DdeI CTNAG 2 cut(s) 79, 239
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 1 cut(s) 296
FaiI YATR 5 cut(s) 55, 267, 273, 284, 294
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 2 cut(s) 10, 188
HapII CCGG 2 cut(s) 101, 119
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 177, 222
Hin1II CATG 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 3 cut(s) 92, 145, 286
HpaII CCGG 2 cut(s) 101, 119
Hpy166II GTNNAC 2 cut(s) 333, 347
Hpy188I TCNGA 2 cut(s) 82, 150
Hpy188III TCNNGA 3 cut(s) 119, 293, 317
Hpy8I GTNNAC 2 cut(s) 333, 347
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 3 cut(s) 21, 49, 222
HpyCH4V TGCA 2 cut(s) 4, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 79, 239
HpySE526I ACGT 3 cut(s) 21, 49, 222
Hsp92I GRCGYC 2 cut(s) 177, 222
Hsp92II CATG 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 8 cut(s) 46, 114, 132, 170, 202, 327, 330, 354
MaeII ACGT 3 cut(s) 21, 49, 222
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 281
MluCI AATT 1 cut(s) 166
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 2 cut(s) 128, 301
MnlI CCTC 3 cut(s) 234, 238, 313
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 52
MspI CCGG 2 cut(s) 101, 119
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 296
NmeAIII GCCGAG 1 cut(s) 168
NspV TTCGAA 1 cut(s) 25
PagI TCATGA 1 cut(s) 292
PfeI GAWTC 2 cut(s) 92, 286
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 1 cut(s) 121
RsaI GTAC 2 cut(s) 311, 332
RsaNI GTAC 2 cut(s) 310, 331
RseI CAYNNNNRTG 1 cut(s) 52
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 25
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 166
SsiI CCGC 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 3 cut(s) 24, 52, 225
TaqI TCGA 2 cut(s) 25, 95
TasI AATT 1 cut(s) 166
TatI WGTACW 2 cut(s) 309, 330
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 92, 286
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 99, 281, 312
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.