Rh4DG145600

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018255
Physical Location & Seq
Forward (+)
29014130 .. 29014727
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG145600.1

Sequence Viewer

Length: 375 bp
ATGAGCTATCTGGTCAGTTCGAGCTTCAGCTCCGGCGGGAGCCACTATGGCATCCGGCTCTCTAATACTACAGTCGCTCCTTGCTTGCCTCTGCCTTCCCTTCCGGTGTTCTGCTGCGCCTCCGATCAGGACCTCTGGTTGTTCGATGAGCCGAGTCGGAGCACTGCGAGGTTGAATTACTACGACGCCGCTCAGGCCAGTAGGATTGCTGATCTACTTCGTGCTACTGACGTCTCTTGCTTTGTTAGGAAGCTGAGGGAGGATACTGCGGCAGTTCAATATGGCTATATCCAACCTATGAATCTTCACGATGAAGTTTTACAGTACAATCCAGAAGCCTTTCAGTACACCACTCCAGGTAAACGAAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

124

Amino Acids

13.84

Weight (kDa)

5.54

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 3 cut(s) 36, 189, 269
AcuI CTGAAG 1 cut(s) 10
AcyI GRCGYC 2 cut(s) 186, 231
AfaI GTAC 2 cut(s) 326, 347
AgsI TTSAA 2 cut(s) 175, 278
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 6, 24, 30, 253
AluI AGCT 4 cut(s) 6, 24, 30, 253
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 238
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 357
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 256
BglI GCCNNNNNGGC 2 cut(s) 48, 194
BisI GCNGC 3 cut(s) 115, 189, 270
BlsI GCNGC 3 cut(s) 116, 190, 271
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 2 cut(s) 192, 254
BsaHI GRCGYC 2 cut(s) 186, 231
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 206, 245
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 3 cut(s) 33, 55, 104
BsmAI GTCTC 1 cut(s) 238
BsmBI CGTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 124, 211
BspACI CCGC 3 cut(s) 36, 189, 269
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 205, 246
BspLI GGNNCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 198
BssMI GATC 2 cut(s) 124, 211
BssNI GRCGYC 2 cut(s) 186, 231
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 73, 324
BstACI GRCGYC 2 cut(s) 186, 231
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 192, 254
BstF5I GGATG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 127, 214
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 124, 211
BstMWI GCNNNNNNNGC 2 cut(s) 48, 194
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 101
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 325, 346
CviQI GTAC 2 cut(s) 325, 346
DdeI CTNAG 2 cut(s) 192, 254
DpnI GATC 2 cut(s) 126, 213
DpnII GATC 2 cut(s) 124, 211
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 238
FaiI YATR 4 cut(s) 48, 282, 288, 299
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 115, 189, 270
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 115, 189, 270
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 115, 189, 270
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 197
HapII CCGG 3 cut(s) 33, 55, 104
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 2 cut(s) 186, 231
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 2 cut(s) 154, 301
HpaII CCGG 3 cut(s) 33, 55, 104
Hpy166II GTNNAC 2 cut(s) 348, 362
Hpy188I TCNGA 2 cut(s) 124, 159
Hpy188III TCNNGA 3 cut(s) 128, 308, 332
Hpy8I GTNNAC 2 cut(s) 348, 362
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 105, 110
HpyCH4III ACNGT 2 cut(s) 73, 324
HpyCH4IV ACGT 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 194
HpyF3I CTNAG 2 cut(s) 192, 254
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 186, 231
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 124, 211
LmnI GCTCC 4 cut(s) 35, 39, 82, 159
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 231
MalI GATC 2 cut(s) 126, 213
MbiI CCGCTC 1 cut(s) 191
MboI GATC 2 cut(s) 124, 211
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 1 cut(s) 175
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 2 cut(s) 137, 316
MnlI CCTC 6 cut(s) 99, 130, 143, 162, 249, 253
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 373
MspI CCGG 3 cut(s) 33, 55, 104
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 48, 194
NdeII GATC 2 cut(s) 124, 211
NlaIV GGNNCC 1 cut(s) 41
NmeAIII GCCGAG 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 116, 190, 271
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 326, 347
RsaNI GTAC 2 cut(s) 325, 346
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 3 cut(s) 115, 189, 270
Sau3AI GATC 2 cut(s) 124, 211
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 164
SetI ASST 9 cut(s) 8, 26, 32, 135, 173, 234, 255, 298, 361
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 130
Sse9I AATT 1 cut(s) 175
SsiI CCGC 3 cut(s) 36, 189, 269
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 73, 324
TaiI ACGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 20, 144
TasI AATT 1 cut(s) 175
TatI WGTACW 2 cut(s) 324, 345
TauI GCSGC 2 cut(s) 191, 272
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 314, 327
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 339
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.