Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006428.1

Orthogroup ID

OG0018255

Physical Location & Seq

Genomic Coordinates Reverse (-)

91433 .. 91867

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006428.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgccactgatccaaataccaacaccccaaaacgaaaacccaaagccgcgcccggcctgtctctggtccggaccccccgatttccacttatttacaacccctgccactccgcctccgccctcccttcatgcccctgcaccgtcgctcgtcgctcccatgccggtgaacctatcgatgagctatccggtcagttcgagctctggctctggctccggcggcagccaccaaggcatccggctctccaatactacgcactccaaagtcgctccttgcttgcctctgccttcccttccggtgttctgcagcgcctccgatcaggacctccagttgttcgatgagccaagtcggaggagtgggaggttgaattactacgacgctgctcaggccagtaggattgctaatctgcttcatgctactgacgtctcttgcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

144

Amino Acids

15.27

Weight (kDa)

6.94

Isoelectric Point (pI)

80.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018255)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000388.1_g000053 Rmu_sc0004386.1_g000027 Rmu_sc0006428.1_g000015 Rmu_sc0006959.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032030
rosa_samantha	Rh1BG198400 Rh1DG226300 Rh4DG145600 Rh6BG129900 Rh6CG128200 Rh6DG115300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	423
AccII	CGCG	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	4 cut(s)	47, 110, 116, 216
AclWI	GGATC	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	364
AluBI	AGCT	2 cut(s)	180, 198
AluI	AGCT	2 cut(s)	180, 198
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	65, 427
AlwI	GGATC	1 cut(s)	4
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	2 cut(s)	54, 384
ApeKI	GCWGC	3 cut(s)	219, 303, 377
AspLEI	GCGC	2 cut(s)	51, 308
AspS9I	GGNCC	3 cut(s)	66, 71, 319
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	3 cut(s)	66, 71, 319
BanII	GRGCYC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	231, 315, 364
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	65, 427
BfmI	CTRYAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	228
BisI	GCNGC	5 cut(s)	47, 217, 220, 304, 378
BlsI	GCNGC	5 cut(s)	48, 218, 221, 305, 379
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	66, 71, 319
BmgT120I	GGNCC	3 cut(s)	66, 71, 319
BmiI	GGNNCC	2 cut(s)	73, 211
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	3 cut(s)	68, 184, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	325, 387
BseAI	TCCGGA	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	325, 387
BseRI	GAGGAG	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	231, 315, 364
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	56, 386
BshVI	ATCGAT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	7 cut(s)	53, 69, 161, 185, 213, 235, 293
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	65, 427
BsmBI	CGTCTC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	56, 386
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	9, 313
BspACI	CCGC	4 cut(s)	47, 110, 116, 216
BspANI	GGCC	2 cut(s)	56, 386
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	173
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	73, 211
BspMAI	CTGCAG	1 cut(s)	305
BspPI	GGATC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	325, 387
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	9, 313
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	2 cut(s)	51, 308
BstKTI	GATC	2 cut(s)	12, 316
BstMAI	GTCTC	2 cut(s)	65, 427
BstMBI	GATC	2 cut(s)	9, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 228, 383
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	3 cut(s)	231, 315, 364
Bsu15I	ATCGAT	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	56, 386
BsuTUI	ATCGAT	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	2 cut(s)	51, 308
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	66, 71, 319
ClaI	ATCGAT	1 cut(s)	173
CseI	GACGC	1 cut(s)	383
CviAII	CATG	4 cut(s)	128, 157, 410, 430
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	11, 315
DpnII	GATC	2 cut(s)	9, 313
EciI	GGCGGA	2 cut(s)	99, 105
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	3 cut(s)	66, 71, 319
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	4 cut(s)	131, 160, 413, 433
FaiI	YATR	4 cut(s)	129, 158, 411, 431
FatI	CATG	4 cut(s)	127, 156, 409, 429
Fnu4HI	GCNGC	5 cut(s)	47, 217, 220, 304, 378
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	5 cut(s)	47, 217, 220, 304, 378
GlaI	GCGC	2 cut(s)	50, 307
GluI	GCNGC	5 cut(s)	47, 217, 220, 304, 378
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	56, 386
HapII	CCGG	7 cut(s)	53, 69, 161, 185, 213, 235, 293
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	2 cut(s)	51, 308
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	131, 160, 413, 433
Hin6I	GCGC	2 cut(s)	49, 306
HinP1I	GCGC	2 cut(s)	49, 306
HpaII	CCGG	7 cut(s)	53, 69, 161, 185, 213, 235, 293
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	313, 348
Hpy188III	TCNNGA	2 cut(s)	69, 317
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	145, 152, 377
HpyAV	CCTTC	3 cut(s)	134, 294, 299
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	137, 303, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 228, 383
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	131, 160, 413, 433
HspAI	GCGC	2 cut(s)	49, 306
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	9, 313
LmnI	GCTCC	3 cut(s)	157, 215, 271
Lsp1109I	GCAGC	3 cut(s)	231, 315, 364
LweI	GCATC	1 cut(s)	240
MaeII	ACGT	1 cut(s)	420
MalI	GATC	2 cut(s)	11, 315
MboI	GATC	2 cut(s)	9, 313
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	7 cut(s)	123, 130, 288, 319, 332, 342, 351
MroI	TCCGGA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	7 cut(s)	53, 69, 161, 185, 213, 235, 293
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	216, 228, 383
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	9, 313
NlaIII	CATG	4 cut(s)	131, 160, 413, 433
NlaIV	GGNNCC	2 cut(s)	73, 211
NspI	RCATGY	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	48, 218, 221, 305, 379
PpuMI	RGGWCCY	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	73, 211
PspPI	GGNCC	3 cut(s)	66, 71, 319
PspPPI	RGGWCCY	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	200
SatI	GCNGC	5 cut(s)	47, 217, 220, 304, 378
Sau3AI	GATC	2 cut(s)	9, 313
Sau96I	GGNCC	3 cut(s)	66, 71, 319
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	6 cut(s)	171, 182, 200, 324, 362, 423
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	3 cut(s)	66, 71, 319
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	4 cut(s)	47, 110, 116, 216
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	173, 194, 333
TasI	AATT	1 cut(s)	364
TauI	GCSGC	2 cut(s)	49, 219
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	3 cut(s)	219, 303, 377
TspDTI	ATGAA	2 cut(s)	116, 398
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	3 cut(s)	66, 71, 319
XceI	RCATGY	1 cut(s)	433
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.