Rh1BG198400

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018255
Physical Location & Seq
Reverse (-)
31514478 .. 31514848
371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG198400.1

Sequence Viewer

Length: 288 bp
ATGAGCTATCCGGTCAGTTCAAGCTCTGGCTCCAGCGGGAGCCACCAAGGCATCCGACTCTCCAGTACTACGCACTCCGAAGTCGCTCCTTGCTTGCCTCTGCCTTCCCTTCTGGTGTTCTGCGGCGCCTCCGATCAGGACCTCTGGTTGTTCGATGGGCCGAGTAGGAGCAGTGCGAGGTTGAATTACTACGACGCCGCTCAGGCCAGTAGGATTGTTGATCTGCTTCGTGCTACTGACGTCTCTGGCTTTAACGATTTAGCTTTGCTTAGTCTGGATGTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

95

Amino Acids

10.08

Weight (kDa)

4.64

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 3 cut(s) 36, 123, 198
AcyI GRCGYC 3 cut(s) 126, 195, 240
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 2 cut(s) 21, 184
AluBI AGCT 3 cut(s) 6, 24, 263
AluI AGCT 3 cut(s) 6, 24, 263
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 2 cut(s) 158, 204
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 139, 158
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 125
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 2 cut(s) 48, 203
BisI GCNGC 2 cut(s) 124, 198
BlsI GCNGC 2 cut(s) 125, 199
BmcAI AGTACT 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 139, 158
BmiI GGNNCC 3 cut(s) 31, 41, 127
BmsI GCATC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 16, 46
Bpu10I CCTNAGC 1 cut(s) 201
BsaHI GRCGYC 3 cut(s) 126, 195, 240
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 63, 207
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 51, 283
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 2 cut(s) 63, 207
BshFI GGCC 2 cut(s) 160, 206
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 160, 206
Bsp143I GATC 2 cut(s) 133, 220
BspACI CCGC 3 cut(s) 36, 123, 198
BspANI GGCC 2 cut(s) 160, 206
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 31, 41, 127
BspT107I GGYRCC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 63, 207
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 133, 220
BssNI GRCGYC 3 cut(s) 126, 195, 240
BssT1I CCWWGG 1 cut(s) 46
BstACI GRCGYC 3 cut(s) 126, 195, 240
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 201, 269
BstF5I GGATG 2 cut(s) 51, 283
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 136, 223
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 133, 220
BstMWI GCNNNNNNNGC 2 cut(s) 48, 203
BsuRI GGCC 2 cut(s) 160, 206
BtsCI GGATG 2 cut(s) 51, 283
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 139, 158
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 8 cut(s) 6, 24, 30, 42, 160, 206, 249, 263
CviKI_1 RGCY 8 cut(s) 6, 24, 30, 42, 160, 206, 249, 263
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 201, 269
DinI GGCGCC 1 cut(s) 127
DpnI GATC 2 cut(s) 135, 222
DpnII GATC 2 cut(s) 133, 220
Eco130I CCWWGG 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 247
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 124, 198
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 124, 198
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 124, 198
GsuI CTGGAG 2 cut(s) 16, 46
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 160, 206
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 3 cut(s) 126, 195, 240
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 57
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 3 cut(s) 56, 79, 133
Hpy188III TCNNGA 2 cut(s) 137, 275
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 114, 119
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 203
HpyF3I CTNAG 2 cut(s) 201, 269
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 3 cut(s) 126, 195, 240
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 133, 220
LmnI GCTCC 4 cut(s) 35, 39, 91, 168
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 240
MalI GATC 2 cut(s) 135, 222
MbiI CCGCTC 1 cut(s) 200
MboI GATC 2 cut(s) 133, 220
MluCI AATT 1 cut(s) 184
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 108, 139, 152, 171
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 48, 203
NarI GGCGCC 1 cut(s) 126
NdeII GATC 2 cut(s) 133, 220
NlaIV GGNNCC 3 cut(s) 31, 41, 127
NmeAIII GCCGAG 1 cut(s) 186
PkrI GCNGC 2 cut(s) 125, 199
PleI GAGTC 1 cut(s) 51
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 31, 41, 127
PspPI GGNCC 2 cut(s) 139, 158
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 2 cut(s) 124, 198
Sau3AI GATC 2 cut(s) 133, 220
Sau96I GGNCC 2 cut(s) 139, 158
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 1 cut(s) 51
SetI ASST 6 cut(s) 8, 26, 144, 182, 243, 265
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 184
SsiI CCGC 3 cut(s) 36, 123, 198
SspDI GGCGCC 1 cut(s) 125
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 65
TauI GCSGC 2 cut(s) 126, 200
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 178
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 139
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.