Rmu_sc0004965.1_g000005

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004965.1
OG0016315
Physical Location & Seq
Forward (+)
30272 .. 31750
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 858 bp
atgctgcagttccacggcggcggctttgtcatcgggagcaacggcacggcgtgtaacgatgcgttttgcaggaggatggcgaagctgtgcgacgtgattgtggtggcggtgggttacaggctggcgccggagagtccgtacccggcggcgtttgaggatgggatgttggtgttgaactggctggccaagcaggccaacttggcggcggtgagaaatcgcaatgggaggaagggaaatggttctggtcatccgggtattttcgatagctttgggtcgtccatggttgagccttggttggctgctcatggtgaaccttctaggtgtatactcctcggagtgagctgtggtgctaacatagcagattatgtagctcggaaggctgtggaagcgagcagcctcttggatcctctaaaagtggtggctcaaatcctgatgtaccctttcttcattggaagcgttcccaccaagtccgagattaagttggcaaattcctacttttatgacaaggctacttgtatgatggcatggaagctatttctacccaaggaagagttttatttagaccacccagctggcaaccctctcgttcctgggagagggccgcccttaaagactatgcctcccacacttacaattgttgcagagcatgattggatgcgtgaccggggaattgcttactcagaagcattgcggaaggctaatgtggatgcacctcttcttgagtacaagaatgctgttcatgagtttgctactcttgatgtgctcctccagacaccccaggccctggcttgtgctgatgatatcacaatatgggtcaagaagtatatatcactcagaggtggtgagttttcttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

285

Amino Acids

31.18

Weight (kDa)

7.59

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 1 - 250 7.2e-56 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24810
malus_domestica MD13G1108800.v1.1
prunus_persica Prupe.1G237400_v2.0.a1
pyrus_communis pycom13g09430
rosa_chinensis RchiOBHm_Chr4g0431891
rosa_laevigata RLG00000006878
rosa_multiflora Rmu_sc0004965.1_g000005 Rmu_sc0037399.1_g000002
rosa_roxburghii Rroxscaffold_5G00373320
rosa_rugosa Rorug04G0252800
rosa_samantha Rh4AG310000 Rh4BG317100 Rh4CG332400 Rh4DG312000
rosa_wichuraiana Rw4G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 784
AccI GTMKAC 1 cut(s) 325
AciI CCGC 8 cut(s) 18, 21, 107, 146, 203, 206, 602, 691
AclWI GGATC 2 cut(s) 398, 411
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 3 cut(s) 140, 437, 725
AfiI CCNNNNNNNGG 2 cut(s) 596, 784
AgsI TTSAA 1 cut(s) 175
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 589, 777, 783
AluBI AGCT 6 cut(s) 85, 267, 342, 371, 532, 572
AluI AGCT 6 cut(s) 85, 267, 342, 371, 532, 572
Alw21I GWGCWC 1 cut(s) 765
AlwI GGATC 2 cut(s) 398, 411
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 4 cut(s) 183, 192, 599, 780
ApeKI GCWGC 3 cut(s) 4, 299, 393
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 599, 781
AsuC2I CCSGG 3 cut(s) 143, 252, 665
AsuHPI GGTGA 3 cut(s) 220, 320, 854
BalI TGGCCA 1 cut(s) 185
BamHI GGATCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 286, 405
BccI CCATC 3 cut(s) 70, 152, 514
BceAI ACGGC 3 cut(s) 31, 58, 63
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 3 cut(s) 591, 779, 785
BcnI CCSGG 3 cut(s) 143, 252, 665
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 2 cut(s) 191, 200
BisI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
BlsI GCNGC 8 cut(s) 6, 20, 23, 148, 205, 301, 395, 603
Bme1390I CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 599, 781
BmiI GGNNCC 2 cut(s) 126, 405
BmrFI CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
BmsI GCATC 3 cut(s) 49, 645, 697
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 3 cut(s) 143, 252, 665
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 9 cut(s) 13, 279, 290, 331, 543, 590, 664, 777, 783
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 784
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 226, 686
BseBI CCWGG 3 cut(s) 591, 779, 785
BseDI CCNNGG 9 cut(s) 13, 279, 290, 331, 543, 590, 664, 777, 783
BseGI GGATG 6 cut(s) 81, 163, 168, 247, 660, 712
BseLI CCNNNNNNNGG 2 cut(s) 596, 784
BseMI GCAATG 2 cut(s) 226, 686
BseMII CTCAG 2 cut(s) 693, 847
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 2 cut(s) 320, 755
BseXI GCAGC 2 cut(s) 286, 405
BseYI CCCAGC 1 cut(s) 568
BshFI GGCC 4 cut(s) 185, 194, 601, 782
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 4 cut(s) 128, 143, 251, 664
BslI CCNNNNNNNGG 2 cut(s) 596, 784
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 4 cut(s) 185, 194, 601, 782
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 1 cut(s) 403
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 8 cut(s) 18, 21, 107, 146, 203, 206, 602, 691
BspANI GGCC 4 cut(s) 185, 194, 601, 782
BspCNI CTCAG 2 cut(s) 692, 846
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 126, 405
BspMAI CTGCAG 1 cut(s) 9
BspPI GGATC 2 cut(s) 398, 411
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 226, 686
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 9 cut(s) 13, 279, 290, 331, 543, 590, 664, 777, 783
BssMI GATC 1 cut(s) 403
BssNAI GTATAC 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 3 cut(s) 279, 290, 543
Bst1107I GTATAC 1 cut(s) 326
Bst2UI CCWGG 3 cut(s) 591, 779, 785
Bst6I CTCTTC 2 cut(s) 543, 720
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 5 cut(s) 123, 183, 192, 391, 574
BstDEI CTNAG 2 cut(s) 679, 833
BstDSI CCRYGG 2 cut(s) 13, 279
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 6 cut(s) 81, 163, 168, 247, 660, 712
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 6 cut(s) 187, 191, 200, 356, 377, 386
BstNI CCWGG 3 cut(s) 591, 779, 785
BstSCI CCNGG 6 cut(s) 141, 250, 589, 663, 777, 783
BstSFI CTRYAG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 286, 405
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 572
BstYI RGATCY 1 cut(s) 403
BstZ17I GTATAC 1 cut(s) 326
BsuRI GGCC 4 cut(s) 185, 194, 601, 782
BtgI CCRYGG 2 cut(s) 13, 279
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 6 cut(s) 81, 163, 168, 247, 660, 712
Cac8I GCNNGC 5 cut(s) 123, 183, 192, 391, 574
CaiI CAGNNNCTG 1 cut(s) 784
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 599, 781
Csp6I GTAC 3 cut(s) 139, 436, 724
CviAII CATG 5 cut(s) 280, 305, 525, 647, 740
CviQI GTAC 3 cut(s) 139, 436, 724
DdeI CTNAG 2 cut(s) 679, 833
DinI GGCGCC 1 cut(s) 126
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 543, 720
EarI CTCTTC 2 cut(s) 543, 720
Eco130I CCWWGG 3 cut(s) 279, 290, 543
Eco32I GATATC 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 3 cut(s) 589, 777, 783
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 3 cut(s) 279, 290, 543
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 3 cut(s) 279, 290, 543
FaeI CATG 5 cut(s) 283, 308, 528, 650, 743
FatI CATG 5 cut(s) 279, 304, 524, 646, 739
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
FokI GGATG 6 cut(s) 88, 170, 175, 234, 667, 719
Fsp4HI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 126
GluI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 4 cut(s) 185, 194, 601, 782
HapII CCGG 4 cut(s) 128, 143, 251, 664
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 5 cut(s) 283, 308, 528, 650, 743
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 133
HpaII CCGG 4 cut(s) 128, 143, 251, 664
HphI GGTGA 3 cut(s) 220, 320, 854
Hpy166II GTNNAC 2 cut(s) 311, 326
Hpy188I TCNGA 5 cut(s) 335, 375, 472, 682, 836
Hpy188III TCNNGA 7 cut(s) 34, 430, 719, 740, 755, 769, 817
Hpy8I GTNNAC 2 cut(s) 311, 326
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 223, 324, 370, 688
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 4 cut(s) 7, 69, 641, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 191, 200, 356, 377, 386
HpyF3I CTNAG 2 cut(s) 679, 833
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 5 cut(s) 283, 308, 528, 650, 743
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 36, 768
Lsp1109I GCAGC 2 cut(s) 286, 405
LweI GCATC 3 cut(s) 49, 645, 697
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 53, 113, 659
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 3 cut(s) 436, 560, 707
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 765
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 487, 633, 669
MluNI TGGCCA 1 cut(s) 185
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 1 cut(s) 142
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 1 cut(s) 185
MseI TTAA 2 cut(s) 477, 608
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 4 cut(s) 128, 143, 251, 664
MspR9I CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 3 cut(s) 591, 779, 785
MwoI GCNNNNNNNGC 6 cut(s) 187, 191, 200, 356, 377, 386
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 3 cut(s) 143, 252, 665
NcoI CCATGG 1 cut(s) 279
NdeII GATC 1 cut(s) 403
NlaIII CATG 5 cut(s) 283, 308, 528, 650, 743
NlaIV GGNNCC 2 cut(s) 126, 405
NmuCI GTSAC 1 cut(s) 659
PagI TCATGA 1 cut(s) 739
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 8 cut(s) 6, 20, 23, 148, 205, 301, 395, 603
PleI GAGTC 1 cut(s) 141
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 141
Psp6I CCWGG 3 cut(s) 589, 777, 783
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 3 cut(s) 589, 777, 783
PspN4I GGNNCC 2 cut(s) 126, 405
PspPI GGNCC 2 cut(s) 599, 781
PstI CTGCAG 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 3 cut(s) 140, 437, 725
RsaNI GTAC 3 cut(s) 139, 436, 724
SaqAI TTAA 2 cut(s) 477, 608
SatI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 599, 781
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 3 cut(s) 49, 645, 697
SfcI CTRYAG 1 cut(s) 5
SfiI GGCCNNNNNGGCC 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 3 cut(s) 487, 633, 669
SsiI CCGC 8 cut(s) 18, 21, 107, 146, 203, 206, 602, 691
SspDI GGCGCC 1 cut(s) 124
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 6 cut(s) 141, 250, 589, 663, 777, 783
StyI CCWWGG 3 cut(s) 279, 290, 543
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 261
TasI AATT 3 cut(s) 487, 633, 669
TatI WGTACW 1 cut(s) 723
TauI GCSGC 5 cut(s) 21, 24, 149, 206, 604
Tru1I TTAA 2 cut(s) 477, 608
Tru9I TTAA 2 cut(s) 477, 608
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 3 cut(s) 4, 299, 393
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 436, 728
TspGWI ACGGA 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 784
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.