Rmu_sc0005160.1_g000009

Patatin-like phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005160.1
OG0017577
Physical Location & Seq
Forward (+)
24686 .. 27384
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
atgcttcgtcagatacttggagctagaagactgcacgatactgttacacgaattgttatacccacttttgacatcaagctgcttcaaccccatgccttctcaacctttgaggcagagatcgatgcttctgaggatgcattgttatcagatgtttgcatcggtacttcgtcggctccaacttatcttccagctcatcacttcaaaactagagactcaggaggaaatgagagggaattccatcttgttgatggtggtgtggcagcaaacaatcctgcattgctggcaatgaagccaacagggacagtgttcccaggaagtcgagatgctctgtctgcaccacaaagcctagactacagcaaatacctagtgctctctctaggcactggaacttcaaagacagcgacgaagtacgatgcaaaaatggcatcaaagtgggggatcatgggctggctctacaaagatggccactgccctttagttgatgcttttacttttgctagtggagacatggatgacactttgagcggggctgtatcgtcgacggacaaggcgacgaagaagaacttgaaggatcttgtgaagactggtgagggtctgctgcagaaacctgtttccaggatgaatcacgacactgggatttttgagcctgtgggaaatgaaggcaccaatgagaacgctctcattaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

229

Amino Acids

24.69

Weight (kDa)

6.15

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 2 - 95 4.1e-09 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017577)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15800
malus_domestica MD00G1045100.v1.1
prunus_persica Prupe.7G135400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105081
rosa_laevigata RLG00000017401
rosa_multiflora Rmu_co8510209.1_g000001 Rmu_sc0005160.1_g000009
rosa_roxburghii Rroxscaffold_2G00138440
rosa_rugosa Rorug02G0126200
rosa_samantha Rh2BG185000 Rh2DG183100
rosa_wichuraiana Rw2G013880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 539
AciI CCGC 1 cut(s) 525
AclWI GGATC 2 cut(s) 446, 579
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 2 cut(s) 163, 410
AgsI TTSAA 4 cut(s) 86, 202, 393, 568
AjnI CCWGG 2 cut(s) 310, 614
AluBI AGCT 3 cut(s) 23, 79, 191
AluI AGCT 3 cut(s) 23, 79, 191
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 2 cut(s) 204, 498
AlwI GGATC 2 cut(s) 446, 579
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 79, 260, 598
ApoI RAATTY 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 599
BalI TGGCCA 1 cut(s) 465
BanI GGYRCC 1 cut(s) 662
BbsI GAAGAC 2 cut(s) 34, 587
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 66, 272, 585
BccI CCATC 3 cut(s) 242, 246, 455
BciT130I CCWGG 2 cut(s) 312, 616
BcoDI GTCTC 2 cut(s) 204, 498
BfaI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
BfmI CTRYAG 2 cut(s) 352, 599
BisI GCNGC 3 cut(s) 80, 261, 599
BlsI GCNGC 3 cut(s) 81, 262, 600
Bme1390I CCNGG 2 cut(s) 312, 616
BmiI GGNNCC 2 cut(s) 174, 664
BmrFI CCNGG 2 cut(s) 312, 616
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 7 cut(s) 112, 124, 165, 313, 403, 434, 472
BmuI ACTGGG 1 cut(s) 642
BpiI GAAGAC 2 cut(s) 34, 587
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 388, 589, 637
Bse3DI GCAATG 2 cut(s) 275, 291
BseBI CCWGG 2 cut(s) 312, 616
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 3 cut(s) 139, 517, 624
BseMI GCAATG 2 cut(s) 275, 291
BseMII CTCAG 2 cut(s) 120, 228
BseNI ACTGG 3 cut(s) 388, 589, 637
BseXI GCAGC 3 cut(s) 66, 272, 585
BsgI GTGCAG 2 cut(s) 17, 318
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 662
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 372
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 204, 498
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 3 cut(s) 117, 438, 571
BspACI CCGC 1 cut(s) 525
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 121, 227
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 174, 664
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 2 cut(s) 446, 579
BspT107I GGYRCC 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 525
BsrDI GCAATG 2 cut(s) 275, 291
BsrI ACTGG 3 cut(s) 388, 589, 637
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 3 cut(s) 117, 438, 571
Bst2UI CCWGG 2 cut(s) 312, 616
Bst4CI ACNGT 2 cut(s) 43, 304
BstC8I GCNNGC 2 cut(s) 282, 449
BstDEI CTNAG 2 cut(s) 129, 214
BstF5I GGATG 3 cut(s) 139, 517, 624
BstKTI GATC 3 cut(s) 120, 441, 574
BstMAI GTCTC 2 cut(s) 204, 498
BstMBI GATC 3 cut(s) 117, 438, 571
BstMWI GCNNNNNNNGC 3 cut(s) 281, 332, 422
BstNI CCWGG 2 cut(s) 312, 616
BstSCI CCNGG 2 cut(s) 310, 614
BstSFI CTRYAG 2 cut(s) 352, 599
BstV1I GCAGC 3 cut(s) 66, 272, 585
BstV2I GAAGAC 2 cut(s) 34, 587
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 3 cut(s) 139, 517, 624
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 4 cut(s) 309, 381, 466, 630
Cac8I GCNNGC 2 cut(s) 282, 449
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 2 cut(s) 162, 409
CviAII CATG 3 cut(s) 92, 442, 508
CviQI GTAC 2 cut(s) 162, 409
DdeI CTNAG 2 cut(s) 129, 214
DpnI GATC 3 cut(s) 119, 440, 573
DpnII GATC 3 cut(s) 117, 438, 571
EaeI YGGCCR 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 310, 614
EcoT22I ATGCAT 1 cut(s) 139
FaeI CATG 3 cut(s) 95, 445, 511
FaiI YATR 4 cut(s) 59, 93, 443, 509
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 91, 441, 507
FauI CCCGC 1 cut(s) 518
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 3 cut(s) 80, 261, 599
FokI GGATG 3 cut(s) 146, 524, 631
Fsp4HI GCNGC 3 cut(s) 80, 261, 599
FspBI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
GluI GCNGC 3 cut(s) 80, 261, 599
HaeIII GGCC 1 cut(s) 465
Hin1II CATG 3 cut(s) 95, 445, 511
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 2 cut(s) 212, 622
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 3 cut(s) 12, 130, 148
Hpy188III TCNNGA 3 cut(s) 216, 320, 626
Hpy8I GTNNAC 1 cut(s) 540
Hpy99I CGWCG 5 cut(s) 172, 406, 541, 544, 556
HpyAV CCTTC 3 cut(s) 106, 562, 653
HpyCH4III ACNGT 2 cut(s) 43, 304
HpyCH4V TGCA 7 cut(s) 34, 137, 156, 275, 335, 416, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 332, 422
HpyF3I CTNAG 2 cut(s) 129, 214
Hsp92II CATG 3 cut(s) 95, 445, 511
Kzo9I GATC 3 cut(s) 117, 438, 571
LmnI GCTCC 2 cut(s) 20, 178
Lsp1109I GCAGC 3 cut(s) 66, 272, 585
LweI GCATC 7 cut(s) 112, 124, 165, 313, 403, 434, 472
MaeI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 119, 440, 573
MbiI CCGCTC 1 cut(s) 525
MboI GATC 3 cut(s) 117, 438, 571
MboII GAAGA 5 cut(s) 39, 176, 568, 571, 592
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 2 cut(s) 51, 233
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 103, 124, 212, 222, 583
Mox20I TGGCCA 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 139
MscI TGGCCA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 430
Msp20I TGGCCA 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 312, 616
MvaI CCWGG 2 cut(s) 312, 616
MwoI GCNNNNNNNGC 3 cut(s) 281, 332, 422
NdeII GATC 3 cut(s) 117, 438, 571
NlaIII CATG 3 cut(s) 95, 445, 511
NlaIV GGNNCC 2 cut(s) 174, 664
NsiI ATGCAT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PfeI GAWTC 1 cut(s) 622
PfoI TCCNGGA 1 cut(s) 614
PkrI GCNGC 3 cut(s) 81, 262, 600
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 310, 614
PspGI CCWGG 2 cut(s) 310, 614
PspN4I GGNNCC 2 cut(s) 174, 664
PstI CTGCAG 1 cut(s) 603
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 2 cut(s) 163, 410
RsaNI GTAC 2 cut(s) 162, 409
RseI CAYNNNNRTG 1 cut(s) 430
SalI GTCGAC 1 cut(s) 538
SatI GCNGC 3 cut(s) 80, 261, 599
Sau3AI GATC 3 cut(s) 117, 438, 571
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 312, 616
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 25, 81, 107, 193, 366, 610, 689
SfaNI GCATC 7 cut(s) 112, 124, 165, 313, 403, 434, 472
SfcI CTRYAG 2 cut(s) 352, 599
SgrDI CGTCGACG 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 2 cut(s) 51, 233
SsiI CCGC 1 cut(s) 525
SspMI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
StyD4I CCNGG 2 cut(s) 310, 614
TaaI ACNGT 2 cut(s) 43, 304
TaqI TCGA 3 cut(s) 120, 319, 539
TasI AATT 2 cut(s) 51, 233
TfiI GAWTC 1 cut(s) 622
TscAI CASTG 4 cut(s) 309, 388, 473, 637
TseI GCWGC 3 cut(s) 79, 260, 598
TspDTI ATGAA 3 cut(s) 302, 635, 672
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 4 cut(s) 309, 388, 473, 637
XapI RAATTY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.